Gene detail

Detailed information of gene02532.t1 in Actinoscyphia liui

Genomic Location: chr1:38257952...38268855
NR annotation: XP_020910774.1, T-cell immunomodulatory protein [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene02532.t1

GTGAAACTTTATTTGCATTTTTTGCTTATTTTTGTAGTACTTTCGGTCAGAGAATGAAATGCAAACTACGGTAATACGACAGTTTAGTATTTTAGTTATACTGAGTGTGTTTGTAAGCCACGTTTCCTCGTCTTTTCACGATGTAACGAGCAAAGTAGGTTTGGCGTCTGTTGATGGCATTTTAGCTGCTTTTGGTGATTTTAACAACGATAAATCGACTGATCTGTTTGTGATATCAAAACAAGGTCAACAGTTGGATATATTGACCTGGGATCCAGGAAATTCGAAGTTCAATCATTTTGGATCTCTTAGTTTCTCTGATAGAAATGTAGTCGTAAATGTGGCACCAGGAGATTTTGATGGTGATGGTTGCATGGATCTTGCCATTACAACACAGAGCTCTCCAATAAATGTTTCTAATGCACAACCAAAGAAGGTCTACATTAGTTGGGGCAACCAAAAAGAGTTGACGAACATCAAAGAATCATTGGCCATCAGTGAAGAGTTGAAGGACCAGCCACTTATTATGGATGTAAATGGTGACCTACTACCTGATCTGTTTGGTACAACTTACAACAAAGATAATACAAGTCTTGAACAAAGGACATATTGGATTGCAGGGAAAAATAGAAGTTTTGTCGCCCAGACACAATCAGACAATATCACAACAAGTGATGGAAAAACTCAACAGCTGATTCTTAACCCACTGAGAATTCCGCATTCAAATGGTTTCTTGGACCTTACTGGTGACATGACTGCAGATTTATTTGTAACCTCCAAGAAAGATAATGGAGAATACCAATTTGAAATTTGGGCAAATCAGGATGGAGTATTAAAGTATGTTAGTCCAGATATCCCTCTACCTGTACTACCTAACAAGGCAACCGTTGCTCATGTTGGACAATCAGCATTTGCTGACTTTGATGGTAATGGTAAGATTGATCAGTTGTTACCAATATGTTTGACTCAAGACTGTGCTAAAAGTGCTATTTACCTGTATTCTAAAAATAAGTGGACAGAGATCATGATTAATCACCCTAAAAGATGGCAGTTAATACCACCATCTAGTAATGACAGTATTCCTAATATCCCCCTTATGACTATTAGAGTAGGTGATTATAACATGGATGGCTATCCAGATGGGCTTATTATCGTACATGTTTTTACTGCTAGGGGGAATACGCGCACTAGAATACCCGTCCTACTGGAGAATGTCCCGTGTAGTGGTAGTGAGAATTGTGCAAATGGTAGAACTTTTGAAATGCAGTGGAAGGCAATGACGTCTTTAGAAGGAGCTGTAGTGGCTACATTCTTTGACATGCTTGAAAATGGAATCACAGATTTCTTGATAGTCACAGAAGCCAAGGGCAAATTTCATCTTCATGCCATACGCAATGATCTTTATGTGGATGCTTCATTCTTGAAAATCATGGTTTTGGGTGGCGTAACGCTTAAGTCATGTTCTAGTGATAAACTGCCTTATGGAGTTAACCAGGTGGGTCCATATGTCAGTTATTCTACCACAGATAAAGATGGTAATCTAAAGATTGGTTCAGCTGGTCAACTGTCCCAGTCAGGTTACTTCTCACTGCAATGTCCTTATATCGTGTTTGGGTTGGGACGTACACCAAACTTTGTTGATAAACTCAGTATTGGTATGCCACGTGCTAAAGGATCACCTCTACGTACCCACACATGGCCGTCTATTATTCCAAACTCACAAATGATAATTATCCCGTATCCTCCTGATAGTCCAGATGAATGGAGTTCCAAGCTGCTGGTTACCCCCAGTAAACTAGTTTTACTGACAGCACTGTGTTTGTTGGGAATTTGTGTTCTTCTTGCAATAGTCATTGTGGCTCTCCATCTCATTGAAAAGAGAGCCGACCAGAAAGAGAAGAGAGAAGATGCCCACAAGTTCCACTTCGACGCCATGTAAAAACAACGAGATGTAATTTTGTACTTTTAATTTGTGTACAAACCAAGGACGAGTGATAGTGCTGAGAGAAGATGTAATGTTTCGTATTTTTATCAATGGTTAACATGGAGGATCAGCTATTGCTTTCAGCAATTAGAATTTATTTAAGATATGCGTCATCCTCAGCTAGTTCTTTGATTAACTCTTCACTGACACACAGGCAGCCCAAGCAATTGTCTTGTATACAATAAATCGTTAGTTGTTTTTGATAGTATGTAGATCCTTTCTAAACACTTAAAACGGCTAAAAACCAGCTAGAAAGGAACTACATACTATCAAGAACAACTACAGACAAAGGTTAGTCCAAGTTTTTACGATATATACGAATTTTACGATATTTCGATTTACTGTATTCAAGACAATTGCTTGGGCTGCCTGTGCTTCAGATAGATAAATGGGGTTCATAAATAGTAAGATAGCATTGGGGTCACAGATTAGAGACTACGAATTAAAAAAAATATTTATAAAATATACAGTTTGACATGACAACGTAGCCACTTGGCTAACTGGTTACCGTATACTCACGAATTCAATTAAATAATAAAAATGTCGTTTTAGATAAACCATTTCACGAATCCAGGATTGTATGTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TB96	T-cell immunomodulatory protein OS=Homo sapiens OX=9606 GN=ITFG1 PE=1 SV=1
Q99KW9	T-cell immunomodulatory protein OS=Mus musculus OX=10090 GN=Itfg1 PE=1 SV=2
Q8R4E1	T-cell immunomodulatory protein OS=Rattus norvegicus OX=10116 GN=Itfg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005566 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR024881 all species →	Family	T-cell immunomodulatory protein	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13412 all species →	T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17257	ITFG1; integrin alpha FG-GAP repeat containing protein 1	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.