Gene detail

Detailed information of gene02535.t2 in Actinoscyphia liui

Genomic Location: chr1:38296036...38330747
NR annotation: XP_031561987.1, FH1/FH2 domain-containing protein 3-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene02535.t2

ATGAAGGAACTTGCGCGAAATTCGTCCAGAGATTTTACGCGAAATGGATCACGTGGATCAACACCGAACCCCCAGCGAAGCAGACGAAGTGGGTCGTCTGCGCTTGCGTCAAACGAGAAATTGCGGAAAGTCCAGGCCGACGAAGCCACTGCAGTGTCCGATGTTAAGATGGCGCTTACATGCAAAGTACAGTACTTAGATGACACGGACCCGTTCGCCAGCACTAATTTTCCAGAACCAACTCGTCCACCAACATATACATTCCACTTAAATATTCCACTGTGCCAGCAAGTAGATGGATTACATCGACTGTTATGCGCACCACACGCAATTGATGATGTGGCCCTTCAGCTATCGCATAATGGATGTTATTTGGAGCTGGAAAATACACTGGAGGAGCAAGCAGACTTGTTAGAGGGCTTTCTTGATAGCCGCAAAAACACCATAATACTACGGACGTCGCTGTCTGTTCGTGTCCACAATTGCATAGCAAAATTACTCGCAGCTTCGGGCAGAGAACTAAGAAGAGCTTTGTTCTCGCTAAAACAAATTTTCCAGGATGATAAAGACCTCGTTCATGAGTTCGTTAATTCAGATGGACTTAATGCGCTTATTACAGTCGGTCAAGACGCTGACCAAAACTACCAGAATTATATCCTTAGAGCCATTGGTCAAATTATGCTTTACGTTGATGGCATGAATGGTGTGATCAACCACAATGAGACACTACAATGGTTATACTCCCTCACAGCATCAAAGTTCCGTCTGGTGGCGAAGACGGCACTCAAGCTTTTGTTGGTGTTCGTGGAATACACCGAGAATAATTCTAGATTACTGTATGAAGCTATACAAGTAGATGATGAAGCACAAGGTCTATCATGGTGGGCAGAGATTGTAGGCATTTTGGCCGAGAAGGAGTCGCTAGGAGATGAAGAGATATTAATTTATGCTATTACATTAATAAACAAAGTTTTATATGCCATCCCAGATCAAGACACGTTTTACGATATCATCGATGCCTTGGAAGAACAGAACATGGGAAATATTGTCAAGATGCATCAAGATAGGAAAAACACCAACATCGATTTTTTAGAACAACTAAACATATATGAAATGTCCATCAGAATCGAAGATGGAGACGAAGAATTGGTGCCATTCACGAGTTCACCGTCCATCAGACAAAGACGTAGGGCCTCAGCCCTTGACATCAATGCAGGTGGTCGACGCAAGAGTCGACGGCATAACTCTATAAGTAAACTAGACATCGTTGGCCAAGAAGACAGTTTCTCTACACGAGGTCGCCTCCCTACCATGCCTGACACCAGAATGGTGAAGGTATCCAGCGCTCCTGACGTCACAGCATCTTACTCTGACCGGCCACCATCCCCTGTGAGATCTTTAGGCAGCTCATCGCCTTCATCTTCCACCCACGAAATTGATGAAATCGATGAGAAGGAACGAAGCAGACTAGCAAGAAGAGAGCGACGAGCAGCCAGACGAGCGGCATTAGGATTTCCTCCAGAGCGGGAAAGTGCGTCAACACCATCTCTAAGCATCAACAATTATTCCAGTCAGAACGACATCAGCACCACAAACAACAATAGCAACGATACGTACAAATACCAACGAGATCACGATACGAAAAGTCAAGGTCACTTAGATATACCTCGTAATAATGATGATCGATCTCAGCCCTCGTCAGGGGTGGCACCGTCCCCCTCTGCATCACCACACCCCTCACCAAGAGCGTCACCTACATCTTCTCCTCAGTTTGTTAGACGAAGAAATAAATTCAACCAAGCTGAGGAAACAGCGACTCAACCAAAGACGACAGGTTCCTGGGAAGACCGAAGGAAGGCAAGAGATGAAGCAAAACGTAACGAACATTGTACCTCAGATAATCGAGAACAAAAAGACTTTACTCCACAAAAACCAGACACTGATTCACTGAAGATCGATACAACTAAACTACGCTCCGACGAATCCTCATCTGACGAAGTCAATCTTAAAAATGCACAAAACGCTGTTTATAGCCATGAACATAGAGAACATTATGTTGAAAGTACCAAGGAGAGTAGCACTAGCGAGAAGGATGAGCCCAAATCACCAAGGCGTCGGCCAAAACTTCATGAAATCGGTCGTTCATCGACCCAAGAGAACCTCGGAATTCGTTCTCCGCCTTTAGATCGGCGAGACAGTGTCGAGAAAAGGTCAAGTATATGCGATGGATATAACAAAAAGATGATGCTCTCTATGCTGTACGGGCAGCAATCTTCGGACGATTTATTCGCGAAGAAATCCGAAACATCTCCGATAAGTGAATCGGTGAACGATCGGCGCGCGCGCTTGTTGAGTCCTGATGAGTCGGAAAATGTTAGTGAGGACGCGGTTGAAACTGGAATTCCTGGAAATACGGTGCAGGACACCATAAAGAAGCTTGATGCTGTGGAAGAGGAAAGCAAAGATTCAACTGCTCCTGAGGGGGACTTTCAAGGATTAATTCAGCAAGCAAAACATAATCTCTTACACGACACCGACGAAAAGGACGAGGAAGCTGTGCGCTTAGAGAACGAACGCGCCGCTGAGGAAGAGAAGAGAAGGATAGAACACGAAGAAGAACAAGCCCGACGTGCAGCGGAGGAAGCAGCGAGGCTACAAGAACTGGAGTGGGAACGAATGATCACCCTCAAACGTTCACTTATCATAAAAGACTTTGATTTCACAGACCTCGGTGAAGAGGATGATGTTGATGTATTTTCAGACGAAAAACATGCGGACGAAACCGACGCACACCCACCCCTTTCGTACATTGGAGGACCTAATCCTCCACCGCCGCCCCCTGGAATAATGTGCCCTCCACCTCCCCCTCCCCCTGGGGGTTGCCCCCCACCCCCACCCCCCGGACCTCCACCAGCAGGTTTTGGCAAAGGTCCCAATAAAAAGCTAGTCCGGTTGTTTTGGCAAGAAGTCAAGAACTCGCCTCTCATCAACGGCGTGAACAAGACAATATGGGGAAATATTGACAAGGTGGACATTGATACGAAAAAACTAGAACATCTTTTTGAAAACAAGTCAAGTGCTAAATTAAAGCAAAGAACTGAAACGGAGGATAAAGATCGAAGAAAAGAAATAGTTGTTCTCGATGTAAAGAGATCTCAGAACATCAACATTGGCCTAACTAAACTACCACCTATTAGAGCATTAAAGCAGGCTATCATCAACATGGACAGTACGGTGATCGATAGAGAAGGCGTTGAGAAAATTCTACAACTTCAACCGACTTCTGAGGAGAAAACTCAAATCCAAGAAGCGCAGCTTGCAAATCCCGACATTCCTCTAGGCACCGCTGAACAGTTTCTACTTTCAATGGCTTCTCTAAGTGAACTCGCACCCAGGTTGCACCTATGGTTATTTAAACTCGACTACGATTTACTGGAGAAGGAAGTCGCTGAACCACTTATGGATCTCAAGGAAGCTCTCGAGGAAATCAATAAAAACATCACTTTTAAACATATTCTAGCGACGTTGTTGGCCATTGGAAACTTTCTGAACGGCAAACAGGTTAAAGGATTTCAGCTGGAATACCTGTCCAAGGTACCAGAAGTCAAAGACACAGTCCATAAACAGTCTCTGTTGTATCACCTATGTTGTATGGTTATGGATAAATTCCCTAACACTACCGACCTTTACAGCGAGTTGGGAGCTGTTCATCGATCTTCAAGGGTCGATTTCGATATCGTCGCCGAGAATCTGAGGAAGTTAAAAGAAAACTGTAAAAAGTCGTGGGAATATCTCAGTATCGTTGCTAAACACGATAGCACAAAGCAGCTGAAAAGCAAAATGAGTGAATTGCTTACCGATGCACAGGAAAGAATAACGATTTTAAAAGTGGTCCACAGACGAGTGATGAACAGGTTCCGTAAGATGATTCTTTATCTAGGTGTCTCGCCAAGTGTTACTAAACGAACTAAGGTGAATGACTTTTGTAAGATAATCAGCGAGTTTTCGTTGGAGTATCGAACAACCAGAGAAAAAGTCTTGGAACAGAAGAAAAAGAGACAAAACATTCGAGAACGAAATAAAACCCGTGGAAAACTTATTACAGAGTCATTTCGCACGTCGGGCCGATCGCCCAGCGAGGAAAGAGTTGAAGAAGCGTTACACAAGGCCCTGTTTGCCAATGGTAATGACCAGGTAGACAACGATAAAGAAAAGATAAAAAGCAATACTCTTCCAAGCACACGTGGGCGACTGCGATCCAATCGTTCTTCTCTCGGTCACGATGAGTTCCCGGATGATAACACAGACGAGGTGATGGACATGCTCGTTAAGTCTGCGACCGCACCCAACACGAAAACTAGAGTACGCACTCGAAATAGAACGGCCAATTCCAATCGTAAATCAGCAGTATGTAAAACTGTACGTTTTTCTTCTTTATATAAAGATAACTGTCTGCTTACTAACTTAATCGTTAACATGGACAGCAAGACTATAAGAGTCTGGGGTCAATATTCAATGTCATTCTATTCTCAATCATCAGATAACTGTGATATAATGGCTGATGAAATAGAGCCAGTTCATTCAAGAGATGAATTGCTAGACCTTTACAAACAGGCTCACACCAATCAAAAGGAAAAAGATATCAAGGAATTGAATCACCATGGAAGAAAGTATCTTAATTCTGTCAATTCCTCAGAAAAATTTGTGATATTTTTGTTCCCTACATTTTTGGAAGAAATCTTAAAGAACTCCTCTGGAAACACCTCAGATGTGTTCACCAAAATACGGAAAGGATTTGAGAATCTTGAGAAATATGGAATCAAGCTTTTGCAGTTCCCATGGAGGAAGGAGTATTACACCATCAAGCTCTACACACCATTCTTCAAGCACGGCATTGAGCCAGTAGTGCCATCACATATTGCATCATCAATCATTCAACTTTATGGCTATAAAGAGAAAAGCAGAGATGTCTTGGAGCTTGATCAACCACCAAAGTCATTTGATTGTATAATAGCAACAGCATTTGAGCTGTTTCTTGGTGCTATTGAACTGGAAGTAATGAGAGACATAGCAGACGAAGTGGACCTCTATACTGATGAATATGCACCAACAGATATTATCAGGGCAAGACAGAAGACTACTGGTGACGCAAAGGTAGCAAGAAAGTACTTGCTAAGGTCAAAGGGTCTGCCGGGTGCTGAGAAGAGAATCAAAAAGGATAAAAGTGAAAGTGAAAACCCAAGAAACATGAAGGACGAGACATCTAGCCACAGTGTACGTTCTAGAAGCTTCCCTCAGGAAAGTTCAATGTCAAACTCTCGAGGGCTTGCAGATTACGGCTCAAAAAGTCCATATAGTTCTCGCGTTGGTAGTGTAAAAGCAAAGCATGTTGGTTCCTCTAATGGATTTGGCCTGCCTGCATTCAGTGACGAGGAACTTTACGGTGTACAGCAAGGAGAGGAAGTGGCATTCAGTGATGCTGAACTCTATGGTGTTCATACTCCTACTGCGGCCTCGTTGAAATACGAAGCAATGGAGGTTGAACCAGACCAAAACCAGCATTATTCAGCCAGACAGTCAGATTATGAAGACATGAGTGCAAATAATGATGACAATATTTATGAATCCATGGCTAGGCAGGACTACAATTTGCCTAAACGTCCAAGTCGCATGGAAGATCTTCCTCCACCTCCTACTTATTCTGAGGCTGTAAAACTAAACACTCCTGATGAATGGGTAGTCATACAATCGCCTTCAAACCAAACAGTGAAAGGCGTTTCTACTACTATCAATGGGTTGTCTGGTCTGAATATCAGTGAAAATGGTACAAATTTTGATGAGAAGGGAATCAGTGATCATGGACGCCCTTCTAAATATGAAGTCAAAAAGTATGGAGGGAAAGGAAGTGGAGATACTAATGGTGAGCTAATTAATATGGAATATCTCAATGCAAAGGGAATGACAACTGTGACCACAACGTCGGCGTGTTCTTCTTCAGGTGTTGCCAGGGACAACCCTAAAACAGCTTATCCAAAGATATCTGACTCACAACCCTCAAATGGTTATGTAAAAGGCAATCAAGAAACTCCTAGGTTAACGGGAGAAAGTGCATACTACAAAGATCTGACAGCCTCGGATGTCAGCAGCAAGAGAAGAACATCTCCAAGAAGTGATCAACTATCAGCTTGTACAGCAACTAGTAAACCTGGAATGAGTGGAGTGATGCTTCCTCCATGCAGCAGCCCCCAGAGTACTGCAACTGAACCCCTTTCAAGGGAAGTACCACCATTACACCAGAGTACTGCAACTGAACCCCTTTCAAGGGAAGCACCACCATTGCAGTATAGCCACACACAAACTTCATCACATGCCTACAAGTACTTGCCAAGTAAAGAAGCAACAAAGAATATGTGTGAGATGTGTCTTAATGTACCCACTCACTACTGCAATATTTGTGCAAAGCTGTGCTGTTCAAGCTGTGTTTCCAGCTTAAACAGGCTACCATGTGATGGGGCACAAATTCATCATATTGTCGAGAGAAGTCGACCTTCAAGTACCAAAGAAAAGGACATCCACAAACAAGAAGATGTCTGTGTTAATTGTAATAAACCTTCAACTCATGAATGCAGTATTTGCAAGATAAAATGTTGCAATGTGTGTCAACATATTGGTACCTTCAAAGAAAAGTGTACGTCAAGTATAGGACATGTATTCATACCAGCCAAGAGTGACGCGGCATTGTATAATGGTCTGGCACTACATAGAGAAATACAGAAAGATTTCGATGAGCAAAACATCTGTGTTCAGTGTGGTCTGTCAGCTAAATTCATTTGTGCAGACTGCCATAACATAGTGTGTAAAGTGTGCTTGGATATTTTCAAAAGAGATCTTTGCCCAGCTACAAAGAAAGAACATTTCTTTCAAATCATTATGGCGCAGACCCAAAGAACTGACACCAAAAAGGCAGAGCCGTGGTCTTGCAAACGATGCACATACGTCAACCCGCCTGAAAACAGGATCTGTTCAATGTGTGCAACTTCACAGGGAGTCACTGGGGTGGAGTATCCTGAGAGTGGTAGCAGGAGGTGTGGTGTTTGTACTTATGGAAACAAAGAGGGTGCAAGAATATGTGCAATGTGCAACCGCTCTCTTGGTCTTGACAAGGCAGAATCGTATCTCTAA

Transcript

gene02535.t2

Protein

gene02535.t2

MKELARNSSRDFTRNGSRGSTPNPQRSRRSGSSALASNEKLRKVQADEATAVSDVKMALTCKVQYLDDTDPFASTNFPEPTRPPTYTFHLNIPLCQQVDGLHRLLCAPHAIDDVALQLSHNGCYLELENTLEEQADLLEGFLDSRKNTIILRTSLSVRVHNCIAKLLAASGRELRRALFSLKQIFQDDKDLVHEFVNSDGLNALITVGQDADQNYQNYILRAIGQIMLYVDGMNGVINHNETLQWLYSLTASKFRLVAKTALKLLLVFVEYTENNSRLLYEAIQVDDEAQGLSWWAEIVGILAEKESLGDEEILIYAITLINKVLYAIPDQDTFYDIIDALEEQNMGNIVKMHQDRKNTNIDFLEQLNIYEMSIRIEDGDEELVPFTSSPSIRQRRRASALDINAGGRRKSRRHNSISKLDIVGQEDSFSTRGRLPTMPDTRMVKVSSAPDVTASYSDRPPSPVRSLGSSSPSSSTHEIDEIDEKERSRLARRERRAARRAALGFPPERESASTPSLSINNYSSQNDISTTNNNSNDTYKYQRDHDTKSQGHLDIPRNNDDRSQPSSGVAPSPSASPHPSPRASPTSSPQFVRRRNKFNQAEETATQPKTTGSWEDRRKARDEAKRNEHCTSDNREQKDFTPQKPDTDSLKIDTTKLRSDESSSDEVNLKNAQNAVYSHEHREHYVESTKESSTSEKDEPKSPRRRPKLHEIGRSSTQENLGIRSPPLDRRDSVEKRSSICDGYNKKMMLSMLYGQQSSDDLFAKKSETSPISESVNDRRARLLSPDESENVSEDAVETGIPGNTVQDTIKKLDAVEEESKDSTAPEGDFQGLIQQAKHNLLHDTDEKDEEAVRLENERAAEEEKRRIEHEEEQARRAAEEAARLQELEWERMITLKRSLIIKDFDFTDLGEEDDVDVFSDEKHADETDAHPPLSYIGGPNPPPPPPGIMCPPPPPPPGGCPPPPPPGPPPAGFGKGPNKKLVRLFWQEVKNSPLINGVNKTIWGNIDKVDIDTKKLEHLFENKSSAKLKQRTETEDKDRRKEIVVLDVKRSQNINIGLTKLPPIRALKQAIINMDSTVIDREGVEKILQLQPTSEEKTQIQEAQLANPDIPLGTAEQFLLSMASLSELAPRLHLWLFKLDYDLLEKEVAEPLMDLKEALEEINKNITFKHILATLLAIGNFLNGKQVKGFQLEYLSKVPEVKDTVHKQSLLYHLCCMVMDKFPNTTDLYSELGAVHRSSRVDFDIVAENLRKLKENCKKSWEYLSIVAKHDSTKQLKSKMSELLTDAQERITILKVVHRRVMNRFRKMILYLGVSPSVTKRTKVNDFCKIISEFSLEYRTTREKVLEQKKKRQNIRERNKTRGKLITESFRTSGRSPSEERVEEALHKALFANGNDQVDNDKEKIKSNTLPSTRGRLRSNRSSLGHDEFPDDNTDEVMDMLVKSATAPNTKTRVRTRNRTANSNRKSAVCKTVRFSSLYKDNCLLTNLIVNMDSKTIRVWGQYSMSFYSQSSDNCDIMADEIEPVHSRDELLDLYKQAHTNQKEKDIKELNHHGRKYLNSVNSSEKFVIFLFPTFLEEILKNSSGNTSDVFTKIRKGFENLEKYGIKLLQFPWRKEYYTIKLYTPFFKHGIEPVVPSHIASSIIQLYGYKEKSRDVLELDQPPKSFDCIIATAFELFLGAIELEVMRDIADEVDLYTDEYAPTDIIRARQKTTGDAKVARKYLLRSKGLPGAEKRIKKDKSESENPRNMKDETSSHSVRSRSFPQESSMSNSRGLADYGSKSPYSSRVGSVKAKHVGSSNGFGLPAFSDEELYGVQQGEEVAFSDAELYGVHTPTAASLKYEAMEVEPDQNQHYSARQSDYEDMSANNDDNIYESMARQDYNLPKRPSRMEDLPPPPTYSEAVKLNTPDEWVVIQSPSNQTVKGVSTTINGLSGLNISENGTNFDEKGISDHGRPSKYEVKKYGGKGSGDTNGELINMEYLNAKGMTTVTTTSACSSSGVARDNPKTAYPKISDSQPSNGYVKGNQETPRLTGESAYYKDLTASDVSSKRRTSPRSDQLSACTATSKPGMSGVMLPPCSSPQSTATEPLSREVPPLHQSTATEPLSREAPPLQYSHTQTSSHAYKYLPSKEATKNMCEMCLNVPTHYCNICAKLCCSSCVSSLNRLPCDGAQIHHIVERSRPSSTKEKDIHKQEDVCVNCNKPSTHECSICKIKCCNVCQHIGTFKEKCTSSIGHVFIPAKSDAALYNGLALHREIQKDFDEQNICVQCGLSAKFICADCHNIVCKVCLDIFKRDLCPATKKEHFFQIIMAQTQRTDTKKAEPWSCKRCTYVNPPENRICSMCATSQGVTGVEYPESGSRRCGVCTYGNKEGARICAMCNRSLGLDKAESYL

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2V2M9	FH1/FH2 domain-containing protein 3 OS=Homo sapiens OX=9606 GN=FHOD3 PE=1 SV=2
Q76LL6	FH1/FH2 domain-containing protein 3 OS=Mus musculus OX=10090 GN=Fhod3 PE=1 SV=1
Q9Y613	FH1/FH2 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FHOD1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF21388 all species →	SPATA2_PUB-like	Spermatogenesis-associated protein 2, PUB-like domain	Domain	Interproscan
PF18382 all species →	Formin_GBD_N	Formin N-terminal GTPase-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR048839 all species →	Domain	Spermatogenesis-associated protein 2, PUB-like domain	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR041387 all species →	Domain	FHOD1, N-terminal GTPase-binding domain	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene02535.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.