Genomic Location: chr1:39031438...39035322
NR annotation: XP_031571378.1, peptide methionine sulfoxide reductase-like, partial [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene02598.t1 |
| Transcript |
| gene02598.t1 |
| Protein |
| gene02598.t1 |
| UniProt accession | Description |
|---|---|
| P08761 | Peptide methionine sulfoxide reductase OS=Drosophila melanogaster OX=7227 GN=MsrA PE=1 SV=2 |
| Q5VPG8 | Peptide methionine sulfoxide reductase A5 OS=Oryza sativa subsp. japonica OX=39947 GN=MSRA5 PE=2 SV=1 |
| Q12TP4 | Peptide methionine sulfoxide reductase MsrA OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) OX=259564 GN=msrA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004522 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20939 all species → | MsrA_helical | Selenoprotein methionine sulfoxide reductase A, helical domain | Domain | Interproscan |
| PF01625 all species → | PMSR | Peptide methionine sulfoxide reductase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050162 all species → | Family | Methionine Sulfoxide Reductase A | Interproscan |
| IPR049006 all species → | Domain | Selenoprotein methionine sulfoxide reductase A, helical domain | Interproscan |
| IPR036509 all species → | Homologous_superfamily | Peptide methionine sulphoxide reductase MsrA superfamily | Interproscan |
| IPR002569 all species → | Domain | Peptide methionine sulphoxide reductase MsrA domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42799 all species → | MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008113 all species → | Molecular Function | peptide-methionine (S)-S-oxide reductase activity | Interproscan |
| GO:0034599 all species → | Biological Process | cellular response to oxidative stress | Interproscan |
| GO:0036456 all species → | Molecular Function | L-methionine-(S)-S-oxide reductase activity | Interproscan |
gene02598.t1.Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
