Gene detail

Detailed information of gene02633.t2 in Actinoscyphia liui

Genomic Location: chr1:39815249...39818710
NR annotation: KXJ16098.1, GTP-binding protein rho1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene02633.t2

ATGGATGAAAGGATTCCGCATCTTAAAGTGATGTTTCCAAATATACATATTCTCCTCGTTGGGGTTAGGGGTGACCTTAGACAAGACAACTCACACCAGTGCCCTCTCTTTCCTAAAGCATGTGGTCAGTGGTTTGCTCATCTTGTTGGAGCTGTGCACTATGTCGAGTGTTCTGCAATGATTGGCCAAGGCATTCAAGAGGTATTCCAGGAAGCAATCCGCGCTAGTTTTGGTAAGAGTTATACTGGAATTACTAATGACGATTTAGAACGTTTAATGATTACCAAAATATCCAAGGAAGATGAATGGATGTCCATGATATATGAATTAAGTCCAATAAAAAACAGTGGCCCTAAACCAGACCAGGTATTGAGAAATCAACTGCAGCTTCTTGACAACCACTTGTTTGATGTTGCATCTAATTCAGATTGTTCGTTAGAGGATATCTGTTTCTGCAGAACTCAAGAAATCGACACAATTCATATAACAACGCGACTTCTTAATGTTGGAGATATCACTGACAAATACGCCATGGCAAATTGTGCATGGTGGTGTGTGGATGAGCTTAAATATCACACTACTCGTGATATTCAGGCTTTAACTAAAGTTTTGGTTGGTAAAAATAGTACCACTTCACTGCGCTTTGTCAAACAAGATTGTTCTTCAATTGTTGAGTTTCTTCTTTCATGTGCTCCAATCACTATTGGCAGTTTGATTATTGTTAGCTGCACCGGATCGCTGTCATTCGACTGGCTATCTTTGTTAGAAGGATTGGAGTATCTCGTAATTGTCGATACTAAGGTTGACTTCACCACTCTCACATTTCCATCAAGCGTCATCTATTCATTGAAGCATCTTGTGCTGCAGAAGTGTCATCAGGAAACGGAAGAAGTTCCTCGTGTGATAGGGAATCTTAGCAACTTGCAAGTTTTGGATGTTACTTGTAATCACTTTACAAGACTTCCCGACAGCCTCAGCGATCTTTACAATGTTCATACATTACTTTTTGATCGAGAAAAAATGGTCTTTCCGCCATCGTTAGTGGTCCATAAGTCAATCAAAGACATATTTCAATATCTTAAAGCATTTCAGGGGCAGCTGGAAGAAAACCAAGAAGCTAAGATGATGGTCGTAGGGCAGGAGGGTGTCGGTAAAAGTACTCTATTGGAAAGTTTTAAGCGTAACCCCTTGTCGCGATGGTTATGGAACACTATTCCACCGCCAAAGACGGACGGAGTGAAGATCTCAGTTCTACAGTTGAAAGCGACTGACTGCAAAGTTTACGACCTTGCTGGCGATGTTGAATATCTGAACACACATTCTCTTTTTTTCTCCTCGAAATGCCTCCATTTAGCCGTTTTCAATTTGAGTCAATTTGTAGTTAGCAAAAATGTTCGTTCCTTTGACCAATTCTGTCGGCTTGAGCTTTGGCTTCAGACAATTGCCTGTCAAGATGTACACTCATATGCCATTATTGTTGGTACTCATGCTGATCATCCCATGTTAAGCACAGGTGTTCTTGCAAGAATTCGTGCTTCCTTGGGCAAAATACTTGCCAAATATCGTTCGCAACACCTCGTCTCCTGTGAAGAAGAATGTTTGATCTGTAATCCACAAACGTCTTCTAAAGAACTTGCAGTTGTGATTGACAGCTCTGAAACCAGCTGCACCTCATCCTACGTTCCCCACATTTTGGGTTACCATGAAGTAAGTGGCATCACAAACAAGAACATTGGAAGGCTAAAGCTAAAAGTCGGGTTTTCAATTTCCAATCTCAGGTCTTACACAGCTACTGAAAATATACCTAAAACATGGTTACTGTTTCGTACCTCTGTTATGACAAAGCTGTCACAAGACGAAGAACTGAAAACACAGCCTCTTTTGTCGTTGTCTGATGTTGATGATCTTGCAGATGAAGCTGGAATCGCTAATCATCCGTCAATTGTAGCGATGCTGCGATTCTTTCATTCCCAAGGCCACTTCCTTTGGTATGAAGATATACCTGAGATGAAAGACTTCGTCATTCTGGATCCTTCGTGGCTTTCCAATCAACTTCGAACACTCATCTCTTACCAACCAAGTGTAGATACTATTTGTGAAGGCGTGTTGCATCATTCAGAGCTACCTCAACTTTGGGCAGATACGGATGAGGAAAACCGTTTTAGACTCATTAGTCTGTTCAGAAGTGTGGGTTTGTGCTTTAGCATCTCACCGATGGAAGAACTCTTCCCATGCAAACTGCCTGTCGGATGGCCAGATCGAGAAATGTGGCCACCATTACCTCACCCAAATGAAAACCAAACGAGCCTTTTGTTCTTGTTCAGCTTTGTACCTCCATCATTTTTTCCAGATTTGATAGTAGCCGTCAACAAGAAGCGGGAGTGCTTTGCCTTCAACGTGCAACCTCTCTACTATCGCTTCAATGTGGTGTACATTACTAAAGAACAGTGTTTGTGCTCTTTTCACGAAGAGGAATACTTGAAGAGGATTGCTGAAGAGAGTAACTGCAACAACGTCCAGCAAGCACTGTTATTCCATAGAATCCACTTGGAGTTGATGCCCTACAGCAACTCCTTGAAGGTAACGATACGAGGTCCTAATCCTTGTTGTATGATACCCAACATCAGATCCATTATAGAGGGTGTGCAATCTCGTCGCTATCCAGGCATTACCTATACACAACGGATTGTATGTCCCGAGTGTGAGATGAAGAAAGTTCAAGACCCCTCGAGCTTTGAATTTGGTGATTGTCACGACGGGTTTTGCTCAAAGGGTCACAACGTTGGCAGTTCACAAGACATTTTGTCTGGAAAACTGAGTTCTTCTGTAGTTGTTCCTTCAGCAGTTGGCCAGTTAGGACGAAGCGTTGGCGAGACCCTGGAAGACCATTTCTGTCCAAAACTCTTTGTTGTTTTGCCTATCAACTTGGAAGGTCTTTCTCTAAAGGACCGTTTTGTGTACTCGTACATCAGAGATGGATATGCCGTCCATCTACTTTGTGAGTGTCCTGGTGAATGGCATTTTGTAGCCTTTCCTGGATTCCGTGTTGGAAAACCTAAGGAGTTTTTCGAGAAATACGGCAAGCGAGTGTGTAAGGTGTTACGCGTCATCTCAGCTCTTGGCGTACCTTTCCAAATAGCTTCAGCTGTTGAACCTCATTGCAAAGTTGGAGTAGCAGCAGCCAATGCAGCAGAAAACGTCCGTAAAGACCTCCAGGCTCTTCTTGAGAACTTCCTTGACAAGTACCCTCATCTGAGGACATCGCTTGGCTCATCCAACGACGATCTAAAGGATCTGAAATCATCAGATGGTCTTCAACGCAGTGAACTCTCTCGATTCTTAGAGATTAAAGCAACGGGGCGTGCATTTGGTCCTCTGGCCTGTACGTATGTAGATAAGGTCAACGAGTGGTTGTGGTTATGTGAAGAACACCATCAGAAGTTTAGAATTGTAGAACACTAG

Transcript

gene02633.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1
Q6XHA5	Probable serine/threonine-protein kinase roco11 OS=Dictyostelium discoideum OX=44689 GN=roco11 PE=3 SV=1
Q1ZXD6	Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum OX=44689 GN=roco5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003304 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene02633.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.