Gene detail

Detailed information of gene02692.t2 in Actinoscyphia liui

Genomic Location: chr1:40727110...40744112
NR annotation: XP_028519565.1, uncharacterized protein LOC110254253 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene02692.t2

ATGTCGAAGCAAATTCCTGACGACGTTAAGTGTTTTGTCCGCGCTGTTTTGATTTCATCTGCGAACGGTGTCACTCAGACGAAGTTTTGCCGCGAGTATGAAACATTCGCGAATTGTCGACTTGAATGGCGGAAAATGGGATTCAAGGACCTTTATGAATTTCTCTTAGCAATACCAGACGTGGCTCGAGTGGAATACTCGCCGAAGGACTCGGAAAATCGTGTATTTGGTGTCGTAAAGAACGATGTGTATTCATCTATCCACGCCAAGAAGGCTGGCAAGAAAGGAACTGGGGAGAAACCGCGACCGCCTTCGGAATGGGGGAAGTCGGCCGCTAGTATAAAGCAAAATAATAATAAAAGGACTATTGATGTAGCCAAGAACTTGACATCTCTGAAAGTGACAGTATCTAATGTGAACGAGGATAGCCTAGTTCCTAATGATCAAGGATTATATGGTGTCCATATAAGAAACTTACCTATGCTTTGTACCGAGGAGGAACTTGAGCTATTATTTAAGGAGTATCAATCTCTAAAACTTTGCAAAATTGTTGTCAAGCCCTCCTCTATTTGTGCTTTTGCCAAGTTTAAACTGATGCAAGATGCATTAAAGGCCTTGAGAGAAAAAGATGGATTCAACTTGAGGGGGTGTAAATTAAAACTCAGCAAGGCCAACGAGGGACTGACAAAAGTAAAGCAAAATTCAGAGGGTTCTCAAGGAGCAAAAGATAAGGACCAACTTCCAAAGCTCCCTCCTCTAAAACCAACATCCAAAGCCAAGCTTGTAGTTAATAATGTGAGCATTCTGACTGAGATTGAGCTAATGCAACTCTATTCCAAGTATGGCTTTGTACAACATGTGGAAAAGCAAGGAGACAGTGCTTCGTTGAGTTTTTCTACAGAAGAACAAGCGCTCACTACTCTCAAGAACATGAATGAAGTTTTGATTGAGGGACAAAAACTGACTTTAAGTCCACAGTCAAATATGTCTGTCAGTGAACAAAGAGCTCCAATTAGTAACCATGTACAAGATACTACTGGCACATCTCAAGATTTATCCAGAAGAGGGTCAACTACAAGTACAGCATCACTTCCAACCTTGTATGGCGATCGGTCAGCAACATCTAGTTCATCAAAAGAAAGCATTTTTAGCAATTATGGTGCTTTAGTATCACCTACAGAAAGTCCAGAAAGAAGGCTTAGTGATACTATACCAAGTAGAGAAAAATATAGTGTACAGCAATATAATCAACCACAGCAACAGCATCAAAACTCACAGAATTTTCAGCAACATCAGCAACTGCAGCAGCAACAACAGCAGCAACAACAACATCAGCACCAACAACAACAGCAGCAACAGTATCAAAACTCACAGAATCAACAACATCAGCAACAACAACATCAGCAACAACAGCAGCAACAGCAACAACAGCAGCAACAATGTCAAACTTCTAAAGTCTCTAGTGAGGCTAAACAAGCTACACCAAGTTTACCAAGTCCCCATCAAGCTTTGGAACAAAACATTCATTTGATATTAAACAACGAAGAGATGGAGAAGTTGTGTGGAGCTTGTGGTCATACTATGGCTCAGAGATTTCAAGATCTACCTGATGAAATTGATGTACTTATCACTGAGGTCGTCGATGCTTGTCACTTTTGGGCAATTATTGATAACAAGACTGGTAACTGGGATCAACTGCTGTCTCTTGAACAACACTTACAGAAACCATCAACCACTAAACCCACTGTCCCACAAAAATACACCATCGGTGCTGGGAAATTCACTGAGAATAACATGTGGTATAGATGTTTTGTGATGGACACGTCATCTGATAATAAGTTTGTGAAAGTACTATATACAGACTACGGCAATGCAGAATGGATACCACTGGAACGCTTTAAGTCGCTGGACTCATTCTATTTATCACTTCCTCCACAAGCACATGCATTTTATCTTACTGGTTTAGAGGTCAATCATTCCAATTCTACTGAAATTCAGATGGAAGGAGCCAAATACTTAAGGCAATTGATTGGTGACAAAACTTTGTTAGCCAGGCGAAAAGCACCTGTTGATGTCACCCAGGGACACATTCTAGAAGTTGAATTATATACTAAATCAATGCCTATTGAATTCATAAACAAACAATTGGCAGCTACTAAATATGTGAATAAAAAGACTCCTTCCATCCCCAAGCCATTGGTAGCATCACCATCAAGCTCACTTAGTCATATAGACACCAAGACACCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTAGTCATATAGACACCAAGACTCCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTACTCATATAGACACCAAGACTCCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTACTCATATAGACACTAATACTCCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTACTCATATAGACACCAAAAGTACTCCATCGTTACCAAATAAAAATGAGTACCAAACCATCAAGTTAAAGATTTCATGGGTTCAAAATCCTCACCATATTTTTTATCATGAAGCAACTTCAGAAGCTAAGGAGATACGTGAAATTATAGAAAAGCTGTTGAGTAGAATTCCTGATACAAATTCATACTTCCCTCCACGGAAGGGTGAAGTGGTGTGTTTTGTTTCTCGGGACTACGGCAGAAAACGAGTGAAGATTCTGGAGACTCCACACACTGACAAACCAAAATTGGTCAAAGTAATGTGCATAGATGATGGAAATCAAGTTAAGGCAGAGATTAAGTCTTTGCTACAGTTTCCAAGCCTAATGTCATGCATAGCACCTCAGGCTCATCAAGCTTATTTGTCAGGATTAACGCTTCCACAAAGTCTAGCAATTTGGCCTAAATCAGCCATGGATTTGCTTATGGAGCATAAAGATCAGGTACTGGATGGTAAAATCATTAAGTTTTGGAACACAATACCACAATTGATGCTCTACAACAGCCAAGGGGAATGTCTGAACACGAAATTAGTTGAACTAATTGATAGGGATATCAAGGCATCAACCTCTATGCTTGATTCAGTTGAAGCGAATCCTTCAGAAATGGTAAAAGAACTTGGACCTGCTCCAATTTCTCCCAAAGCTATGCCATCATTCCTACACCCTCAAGGTAACACTGGCACCCATAAACCTGGCAAGGTGGTCCAAGATACCATGGTTCAGCAAACTAGCCAACAGAATAATTCAACATCCAACAGTGATGTCAAGAACTTCAAGAAAGAAGGGGCTGTGACTCAACCACAGTTATCACCCAATTCTAACCCTGGTGTTGTACCTTCTTTCAATGAAAAGCCAATAGAATTACAATCCAGAGGTCACACTGGCTTAAATCAAGGGACCCACTTCTATATGCCTCCACCACCCAGTGACTTAAAAGGAGTACCCCATAAACCACAGGCTTCCCAAGCTGTAGGAAGAATGGGTGTGGCCACAGATGGCTCACAAGTCTCACGAAATGGAGGTGGCTTTCCACCGAGTTCTAACCCCTCGCACGGTGGCCAAGTACCCCCCAATATGGGTGTGGCCATGAAGGGCTTACACATCCCAAGAAATGGAGGTGGCTTTCCACCTAGTCCTAACCCATTGCAGGGAGGCCCAGCACCTCCCAATATGGGTGTGGCCATGAAGGGCTTACACATCCCAAGAAATGGGGTTGGCTTTCCACCTAGTCCTAACCCATCGCAGGGAGGACCAGCACCTCCCAATATGGGTGTGGCCATGAAGGGCTTACACATCCCAAGAAATGGGGTTGGCTTTTCACCTAGTCCAAATCCCTCACAAATCCCTCAAAAGTTGGGTCTGTCTATGGATAACTCACCTATGACCAGAAATGGTGGTGGCTTTTCCTCAAACAACACTCCTTCACAGGGAGCAAGGCCTTCAGAAAAAATGGGCGTCGCAGCAGCTGGGCCACAAATTGCCGTAAATGGGAGTGGCTTTCCACCAAAGGTTCAAACACCAAGTAGTGTTCCTTCACACGGCGTACAAGGTTTACCTCCCAACATCCCTTCTTATCAGTCACCACCAAGCAATGGTCCGTCAAACCAACAAAGTTTACAAAATGAGTGTTGGAGGGAAGAAAGGGAGGCTCTGCTTGCAAGAAGGAAGGAGCAGGAATTGCACATTGAAAAAAAACTTAGAAAACAAGAAGTTCCAAAACCACCATCAGTACAGAACCTTCAACAGCTCAAGACAAAGCTTGAGAAACAAATCAGACTAAAAGAACTGGAAAATCAAGTTCTCAAACTGAGGAAAGAAGTTGAATCATGTGAAGGAATAAAAGCTGATTTACAGTACCATCTAATCAATTAG

Transcript

gene02692.t2

AAAATGGCGGATGTATTAACGAGTTAGTCCTGAAGTACTTGTGTTTTTGCGGGCTTATTGTGGATTTATTCCAGTTACAACTGAACTCAGAGTAGAAGCAAGTGTAGCAAAATGTCGAAGCAAATTCCTGACGACGTTAAGTGTTTTGTCCGCGCTGTTTTGATTTCATCTGCGAACGGTGTCACTCAGACGAAGTTTTGCCGCGAGTATGAAACATTCGCGAATTGTCGACTTGAATGGCGGAAAATGGGATTCAAGGACCTTTATGAATTTCTCTTAGCAATACCAGACGTGGCTCGAGTGGAATACTCGCCGAAGGACTCGGAAAATCGTGTATTTGGTGTCGTAAAGAACGATGTGTATTCATCTATCCACGCCAAGAAGGCTGGCAAGAAAGGAACTGGGGAGAAACCGCGACCGCCTTCGGAATGGGGGAAGTCGGCCGCTAGTATAAAGCAAAATAATAATAAAAGGACTATTGATGTAGCCAAGAACTTGACATCTCTGAAAGTGACAGTATCTAATGTGAACGAGGATAGCCTAGTTCCTAATGATCAAGGATTATATGGTGTCCATATAAGAAACTTACCTATGCTTTGTACCGAGGAGGAACTTGAGCTATTATTTAAGGAGTATCAATCTCTAAAACTTTGCAAAATTGTTGTCAAGCCCTCCTCTATTTGTGCTTTTGCCAAGTTTAAACTGATGCAAGATGCATTAAAGGCCTTGAGAGAAAAAGATGGATTCAACTTGAGGGGGTGTAAATTAAAACTCAGCAAGGCCAACGAGGGACTGACAAAAGTAAAGCAAAATTCAGAGGGTTCTCAAGGAGCAAAAGATAAGGACCAACTTCCAAAGCTCCCTCCTCTAAAACCAACATCCAAAGCCAAGCTTGTAGTTAATAATGTGAGCATTCTGACTGAGATTGAGCTAATGCAACTCTATTCCAAGTATGGCTTTGTACAACATGTGGAAAAGCAAGGAGACAGTGCTTCGTTGAGTTTTTCTACAGAAGAACAAGCGCTCACTACTCTCAAGAACATGAATGAAGTTTTGATTGAGGGACAAAAACTGACTTTAAGTCCACAGTCAAATATGTCTGTCAGTGAACAAAGAGCTCCAATTAGTAACCATGTACAAGATACTACTGGCACATCTCAAGATTTATCCAGAAGAGGGTCAACTACAAGTACAGCATCACTTCCAACCTTGTATGGCGATCGGTCAGCAACATCTAGTTCATCAAAAGAAAGCATTTTTAGCAATTATGGTGCTTTAGTATCACCTACAGAAAGTCCAGAAAGAAGGCTTAGTGATACTATACCAAGTAGAGAAAAATATAGTGTACAGCAATATAATCAACCACAGCAACAGCATCAAAACTCACAGAATTTTCAGCAACATCAGCAACTGCAGCAGCAACAACAGCAGCAACAACAACATCAGCACCAACAACAACAGCAGCAACAGTATCAAAACTCACAGAATCAACAACATCAGCAACAACAACATCAGCAACAACAGCAGCAACAGCAACAACAGCAGCAACAATGTCAAACTTCTAAAGTCTCTAGTGAGGCTAAACAAGCTACACCAAGTTTACCAAGTCCCCATCAAGCTTTGGAACAAAACATTCATTTGATATTAAACAACGAAGAGATGGAGAAGTTGTGTGGAGCTTGTGGTCATACTATGGCTCAGAGATTTCAAGATCTACCTGATGAAATTGATGTACTTATCACTGAGGTCGTCGATGCTTGTCACTTTTGGGCAATTATTGATAACAAGACTGGTAACTGGGATCAACTGCTGTCTCTTGAACAACACTTACAGAAACCATCAACCACTAAACCCACTGTCCCACAAAAATACACCATCGGTGCTGGGAAATTCACTGAGAATAACATGTGGTATAGATGTTTTGTGATGGACACGTCATCTGATAATAAGTTTGTGAAAGTACTATATACAGACTACGGCAATGCAGAATGGATACCACTGGAACGCTTTAAGTCGCTGGACTCATTCTATTTATCACTTCCTCCACAAGCACATGCATTTTATCTTACTGGTTTAGAGGTCAATCATTCCAATTCTACTGAAATTCAGATGGAAGGAGCCAAATACTTAAGGCAATTGATTGGTGACAAAACTTTGTTAGCCAGGCGAAAAGCACCTGTTGATGTCACCCAGGGACACATTCTAGAAGTTGAATTATATACTAAATCAATGCCTATTGAATTCATAAACAAACAATTGGCAGCTACTAAATATGTGAATAAAAAGACTCCTTCCATCCCCAAGCCATTGGTAGCATCACCATCAAGCTCACTTAGTCATATAGACACCAAGACACCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTAGTCATATAGACACCAAGACTCCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTACTCATATAGACACCAAGACTCCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTACTCATATAGACACTAATACTCCTTCCATCCCCAAGCCATTGGCAGCGTCACCATCAAGCTCACTTACTCATATAGACACCAAAAGTACTCCATCGTTACCAAATAAAAATGAGTACCAAACCATCAAGTTAAAGATTTCATGGGTTCAAAATCCTCACCATATTTTTTATCATGAAGCAACTTCAGAAGCTAAGGAGATACGTGAAATTATAGAAAAGCTGTTGAGTAGAATTCCTGATACAAATTCATACTTCCCTCCACGGAAGGGTGAAGTGGTGTGTTTTGTTTCTCGGGACTACGGCAGAAAACGAGTGAAGATTCTGGAGACTCCACACACTGACAAACCAAAATTGGTCAAAGTAATGTGCATAGATGATGGAAATCAAGTTAAGGCAGAGATTAAGTCTTTGCTACAGTTTCCAAGCCTAATGTCATGCATAGCACCTCAGGCTCATCAAGCTTATTTGTCAGGATTAACGCTTCCACAAAGTCTAGCAATTTGGCCTAAATCAGCCATGGATTTGCTTATGGAGCATAAAGATCAGGTACTGGATGGTAAAATCATTAAGTTTTGGAACACAATACCACAATTGATGCTCTACAACAGCCAAGGGGAATGTCTGAACACGAAATTAGTTGAACTAATTGATAGGGATATCAAGGCATCAACCTCTATGCTTGATTCAGTTGAAGCGAATCCTTCAGAAATGGTAAAAGAACTTGGACCTGCTCCAATTTCTCCCAAAGCTATGCCATCATTCCTACACCCTCAAGGTAACACTGGCACCCATAAACCTGGCAAGGTGGTCCAAGATACCATGGTTCAGCAAACTAGCCAACAGAATAATTCAACATCCAACAGTGATGTCAAGAACTTCAAGAAAGAAGGGGCTGTGACTCAACCACAGTTATCACCCAATTCTAACCCTGGTGTTGTACCTTCTTTCAATGAAAAGCCAATAGAATTACAATCCAGAGGTCACACTGGCTTAAATCAAGGGACCCACTTCTATATGCCTCCACCACCCAGTGACTTAAAAGGAGTACCCCATAAACCACAGGCTTCCCAAGCTGTAGGAAGAATGGGTGTGGCCACAGATGGCTCACAAGTCTCACGAAATGGAGGTGGCTTTCCACCGAGTTCTAACCCCTCGCACGGTGGCCAAGTACCCCCCAATATGGGTGTGGCCATGAAGGGCTTACACATCCCAAGAAATGGAGGTGGCTTTCCACCTAGTCCTAACCCATTGCAGGGAGGCCCAGCACCTCCCAATATGGGTGTGGCCATGAAGGGCTTACACATCCCAAGAAATGGGGTTGGCTTTCCACCTAGTCCTAACCCATCGCAGGGAGGACCAGCACCTCCCAATATGGGTGTGGCCATGAAGGGCTTACACATCCCAAGAAATGGGGTTGGCTTTTCACCTAGTCCAAATCCCTCACAAATCCCTCAAAAGTTGGGTCTGTCTATGGATAACTCACCTATGACCAGAAATGGTGGTGGCTTTTCCTCAAACAACACTCCTTCACAGGGAGCAAGGCCTTCAGAAAAAATGGGCGTCGCAGCAGCTGGGCCACAAATTGCCGTAAATGGGAGTGGCTTTCCACCAAAGGTTCAAACACCAAGTAGTGTTCCTTCACACGGCGTACAAGGTTTACCTCCCAACATCCCTTCTTATCAGTCACCACCAAGCAATGGTCCGTCAAACCAACAAAGTTTACAAAATGAGTGTTGGAGGGAAGAAAGGGAGGCTCTGCTTGCAAGAAGGAAGGAGCAGGAATTGCACATTGAAAAAAAACTTAGAAAACAAGAAGTTCCAAAACCACCATCAGTACAGAACCTTCAACAGCTCAAGACAAAGCTTGAGAAACAAATCAGACTAAAAGAACTGGAAAATCAAGTTCTCAAACTGAGGAAAGAAGTTGAATCATGTGAAGGAATAAAAGCTGATTTACAGTACCATCTAATCAATTAGAGACATCAAAAATAATAATTATGATTGAATTCTTATCATAGTTTTACATGTTGTTTAAGTTTGTACACTTCGTTGCATTAGATATTATATAATTAATATATTTTTATGTTGCTGATGACAACATATCCTACAATAAAAGTGGGCCAGAAGTAAAGAAAATTATGTGATTTTGCTCCAAACTTACCCTGCGAGCAGAGGTTCTTTTCTACCCCGCTGGGAAGTGATAGGAAAAGAAAGAACCTGTGCTCGCAGGGTACTCCCAACTGCAAGCTGTAAATCTTTTTGGTGTTTTTAGTAATGAAATGTTAACCAGTCAGGGGCGTAGCTAGAGGAGGTTCACGACTTGGTTAGGTTTGGTTAGGTTAGGTTAGGTTTGGTTAGGTTTGGTTTGGTTAGGTTTGGGTTAGGTTTAGGGTTAGTTTTAGGGTTAGGTTTATGGTAAGTTCTCTGGACAAGTCTTACACCAAGTCGTGACCTACGGGAGGGTTCCAGGGGTTGTGGGACCCCCCTTTTGGCCCTTGGTCCTTGTACCTTGTATTTATATATTTAAAAAAAAAACACTTTGGGAAACCCTTGTTGGATGGTATAGCATACTGATTAACCCCCCTTCCCCTTACCAGACAGGCTGGCTACACCCCTGCCAGTAATCCCCTTCTTTCATCCTAGTCTAGTAAAATGACTTTATAATGGCAACAGTTATTCATGAAAGTGAAAAGTAAATTATTTCATAAACACAGTATGTGGTTATTTTTTTCACTGGTTTAAATTTTTTAGGGCAGACTAGTGTTTTATAGTAGAGTGCAGACAATATAACCGTGAAAAACTACTAACTAATTAGTGCTAAATAGCACTGATTAAACAACAGAAAACAGG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF12872 all species →	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR025605 all species →	Domain	OST-HTH/LOTUS domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039091 all species →	Family	Aryl hydrocarbon receptor/Aryl hydrocarbon receptor repressor	Interproscan
IPR041966 all species →	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10649 all species →	ARYL HYDROCARBON RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0004879 all species →	Molecular Function	nuclear receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006805 all species →	Biological Process	xenobiotic metabolic process	Interproscan
GO:0009410 all species →	Biological Process	response to xenobiotic stimulus	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.