Gene detail

Detailed information of gene02838.t1 in Actinoscyphia liui

Genomic Location: chr1:42925454...42941689
NR annotation: XP_028518900.1, cartilage oligomeric matrix protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene02838.t1

ATGAGGCTTCAACGAAGCTACTACTGGTGTCTACTTCTTGTGGTTTATATGGTCCCAGGAGAAGCCAAGATAAAAGCCGATTTTGACCTGCTCAAACGCTTTGGACTCAACAAAGGAGTAAGCGGAGTTGGCAAAGTGACCGGACATGTTGGAGAGAAAGACGAGGCGTACAGATTTGACAGAGGGTTAGGTAGACTACAGATGGGACAAGAGTTTGTGAGAGACCTGGCAGATATTAGTCAGAAAACACACAGTTTGGTTGTTACAGCAAATCTCAAACTTGATCGAGATTCTTATGGAACACTATACTCTTTGGAAACAGAGACACAAGGCAAAATGATTTTCACCGTCCTTTTCAGCTGCTTCAGCAGATGTAGACTGGCTGTATATTATCCAGATGGTGCCAAAACAGGGCCAATTTTTTTCGACCTTGTACCAATTCACTTGTCCGATGGAAAGTGGCATAAAATGGTCTTACATTTTCAGACAAACAAAAAAGGCAAAAACGTTGTGACCTTGTTTATGGATTGTAAGCGCATCGGCAAGAAGAAGATACCTGCCACTCTCAAAGATTTGTTTCCTGAAGAAACTCAGCAACAAAAGTACGTGCTTCGTTTTGCACAACGAGGAGTGTATAATGCTGGCAGCCTCCAGAATGTGTTCCTCATCTTCGGCGCACATGCGCATCCATTCACGGATCCAGATGCTTGCTACAAATCAGTCAAAGATATCCTGACGAAATTACACAAGAAACATGTCAGTAGACCAAAATCCACTACCATCGCCCCACCACGCACAACTATAAAACCCGTGGTATCTTCTGTGCAGTTTAAACCCACCAAGGCACAGAAAGATGGAACAACAAGAAGAATACCATATTCAACTGAACGATATCCATACAAGGTTGCTGCACACCATGAAGCCACCCCTAAAGATCAGAATGTGAATATCTTAGACCCAGGGAGAGACAAGTATGGATCAGTTAAAGAAGTTGCGCTGACTAGCAATGACGAGAAGTTGGACTACTTAGTGGATGTAATTAGAGAAATGAAAAAAGAACAATTCAAAAGGGAATCAGAGCTCAGGAGAACTATAGAAATGCTGCGGATTGATCTTAATTCTCAGTCTAATGAGGTTGGATATGTTCGCACATTCTTGGAGCGTGGGGGTGCGTGCCGGACAGGATCTGCTAAACCAGTGAAACCTCAATTGTTGGTTCTTCCTGGAGAAAGAACCAATGTCCATAATGGAAACCGAGGACCAGGAAAATGCGCTCAAAAGCCTTGTTTCCCATACGTCGACTGCTATGAAACACCTGGCATTGGACTTGGTTTCAAATGTGGACCATGTCCACCTGGATTTAGGGGCAATGGACTTCGATGTGAAGATCTTAATGAGTGTGATTTCTATCCATGTTCGTCGTTGACAAAATGCGTGAATAGAAAGCCTGGGTATGAGTGTACTGCCTGTCCCAAAGGGTACTCTGGTAATGCAACTATTGGGCTGGGACTTGGACAAGCACGGAAAAATAAACAAGTGTGTGCAGATATCAATGAGTGTGATTACAAGAATGGCGGGTGCTCCATCTATTCAAAATGCATTAATACACAAGGTAGCTATCGATGTGGACCTTGCCGCGAAGGCTATAATGGTGACTCGTACAAAGAATGTCGACGAATTTTGTTCTGCTCCGGAGCACCAAGAGCTAATCCTTGTGGATCACTTGCACAATGCATCCCAAGAAATAAAGGGTTGAATTATGAATGTGAGTGTAGACCAGGATATGCTGGTGACGGAGTAGAATGCGGACCAGATAGAGACATGGATGGACTTCCTGACAAAGCTTTGAACTGCCATGGAAGACAATGTCGCAGGGACAACTGCCCCACAGTGCCTAACAGCGGACAAGAAGATCTTGATAGCAATGGCGACGGTGATAGATGCGAGTTCGATGCAGACGGAGACCAACATCCGAACGACCGAGATAATTGTCCATTCGTTCCGAACAATGATCAAAGAAATACAGACTCTGACAAAGTGGGCGACGCCTGTGATAACTGCCTAACCGTGAGCAACCCAGATCAGCTCGATACAGACAATGATGGAACAGGAGATGCATGTGACATAGACATCGACGGAGACGGTATTGTCAACGTGCAAGATAACTGCCCAACTGTTCTAAATCCAGACCAAAAAAATACAGACGGAGATCCTCATGGTGATGCATGTGACAATTGCATACACGTGAAAAATCCCGATCAGGCTGATACTGACGGCGATGGAATTGGAAATGCGTGTGACTACAACGAAGACAAGGACAGGGATGGAATTGACGATAAACATGACAACTGTCCGAATAAACCGAATTCGGCACAGTTAGACACAGACGGAGATGGAAAAGGTGATGTCTGTGACAACGACGACGACAACGATGGTATTCCTGACTTCAGAGATAACTGTCAATTAGTCAAAAACTTTGACCAAAAAGACACAGACAATGACGGTATTGGAGATGTATGTCAAGGAGATTACGATAACGATGGTGTACCAGACAATGAAGACGTGTGCCCATATAATCCCAAGATAATAAAAACAGATTTCAGTAAATTTGTCAATGTCAAACTTGATCCTAGAAGTGGAAAGAAAGATCAGCCTGAATGGAGTGCATCCAAAAGGGGAGATGAAGTATTTGTGGGGAGAAACAGTAATGTTGGGCTGTTTATAGCCGATCCAGTCTTCGAAGATGTTCAATTCAAGGGAACAGCATATGTCAACCTCAAATACGCTGATGACGATATTTGGGGCTTTGTTTTTGGCTATCAAGACTTCAGTAGTTTCTTTTTGCTATCCTGGAAACAAGCTGAACAGGTTTACTGGAATGTTCGTCCCTTTAGAGCAAGGGCAAAACCATGGCTCAATCTTAAGAAAGTGAAATCCCAAACTGGTCCGTCATCAGCAATGCGTAATTCATTGTGGCACTATCAAAGCGTCCCTAAACAGACTAAAGTTATGTGGGAGCAAAAAAGAGGACGTGGATGGCGAGATAAGACTGCGTATAGGTGGGAACTAAATTACACTCCTTCAAACGGTTATCTAAGAATCAAGATGTGGAAAGGCACAAGTCCTATCATGGACACTGGGAGATTACGAGACACTGCTATTCGTGGAGGGCGACTTGGGTTCTATAGTTTCTCACAGGTCCACGTCATCTGGTCAGATCTGTCTGTAAGGTGTCTTGACAATCCATGA

Transcript

gene02838.t1

ACCAAACCAATCATGAGGCTTCAACGAAGCTACTACTGGTGTCTACTTCTTGTGGTTTATATGGTCCCAGGAGAAGCCAAGATAAAAGCCGATTTTGACCTGCTCAAACGCTTTGGACTCAACAAAGGAGTAAGCGGAGTTGGCAAAGTGACCGGACATGTTGGAGAGAAAGACGAGGCGTACAGATTTGACAGAGGGTTAGGTAGACTACAGATGGGACAAGAGTTTGTGAGAGACCTGGCAGATATTAGTCAGAAAACACACAGTTTGGTTGTTACAGCAAATCTCAAACTTGATCGAGATTCTTATGGAACACTATACTCTTTGGAAACAGAGACACAAGGCAAAATGATTTTCACCGTCCTTTTCAGCTGCTTCAGCAGATGTAGACTGGCTGTATATTATCCAGATGGTGCCAAAACAGGGCCAATTTTTTTCGACCTTGTACCAATTCACTTGTCCGATGGAAAGTGGCATAAAATGGTCTTACATTTTCAGACAAACAAAAAAGGCAAAAACGTTGTGACCTTGTTTATGGATTGTAAGCGCATCGGCAAGAAGAAGATACCTGCCACTCTCAAAGATTTGTTTCCTGAAGAAACTCAGCAACAAAAGTACGTGCTTCGTTTTGCACAACGAGGAGTGTATAATGCTGGCAGCCTCCAGAATGTGTTCCTCATCTTCGGCGCACATGCGCATCCATTCACGGATCCAGATGCTTGCTACAAATCAGTCAAAGATATCCTGACGAAATTACACAAGAAACATGTCAGTAGACCAAAATCCACTACCATCGCCCCACCACGCACAACTATAAAACCCGTGGTATCTTCTGTGCAGTTTAAACCCACCAAGGCACAGAAAGATGGAACAACAAGAAGAATACCATATTCAACTGAACGATATCCATACAAGGTTGCTGCACACCATGAAGCCACCCCTAAAGATCAGAATGTGAATATCTTAGACCCAGGGAGAGACAAGTATGGATCAGTTAAAGAAGTTGCGCTGACTAGCAATGACGAGAAGTTGGACTACTTAGTGGATGTAATTAGAGAAATGAAAAAAGAACAATTCAAAAGGGAATCAGAGCTCAGGAGAACTATAGAAATGCTGCGGATTGATCTTAATTCTCAGTCTAATGAGGTTGGATATGTTCGCACATTCTTGGAGCGTGGGGGTGCGTGCCGGACAGGATCTGCTAAACCAGTGAAACCTCAATTGTTGGTTCTTCCTGGAGAAAGAACCAATGTCCATAATGGAAACCGAGGACCAGGAAAATGCGCTCAAAAGCCTTGTTTCCCATACGTCGACTGCTATGAAACACCTGGCATTGGACTTGGTTTCAAATGTGGACCATGTCCACCTGGATTTAGGGGCAATGGACTTCGATGTGAAGATCTTAATGAGTGTGATTTCTATCCATGTTCGTCGTTGACAAAATGCGTGAATAGAAAGCCTGGGTATGAGTGTACTGCCTGTCCCAAAGGGTACTCTGGTAATGCAACTATTGGGCTGGGACTTGGACAAGCACGGAAAAATAAACAAGTGTGTGCAGATATCAATGAGTGTGATTACAAGAATGGCGGGTGCTCCATCTATTCAAAATGCATTAATACACAAGGTAGCTATCGATGTGGACCTTGCCGCGAAGGCTATAATGGTGACTCGTACAAAGAATGTCGACGAATTTTGTTCTGCTCCGGAGCACCAAGAGCTAATCCTTGTGGATCACTTGCACAATGCATCCCAAGAAATAAAGGGTTGAATTATGAATGTGAGTGTAGACCAGGATATGCTGGTGACGGAGTAGAATGCGGACCAGATAGAGACATGGATGGACTTCCTGACAAAGCTTTGAACTGCCATGGAAGACAATGTCGCAGGGACAACTGCCCCACAGTGCCTAACAGCGGACAAGAAGATCTTGATAGCAATGGCGACGGTGATAGATGCGAGTTCGATGCAGACGGAGACCAACATCCGAACGACCGAGATAATTGTCCATTCGTTCCGAACAATGATCAAAGAAATACAGACTCTGACAAAGTGGGCGACGCCTGTGATAACTGCCTAACCGTGAGCAACCCAGATCAGCTCGATACAGACAATGATGGAACAGGAGATGCATGTGACATAGACATCGACGGAGACGGTATTGTCAACGTGCAAGATAACTGCCCAACTGTTCTAAATCCAGACCAAAAAAATACAGACGGAGATCCTCATGGTGATGCATGTGACAATTGCATACACGTGAAAAATCCCGATCAGGCTGATACTGACGGCGATGGAATTGGAAATGCGTGTGACTACAACGAAGACAAGGACAGGGATGGAATTGACGATAAACATGACAACTGTCCGAATAAACCGAATTCGGCACAGTTAGACACAGACGGAGATGGAAAAGGTGATGTCTGTGACAACGACGACGACAACGATGGTATTCCTGACTTCAGAGATAACTGTCAATTAGTCAAAAACTTTGACCAAAAAGACACAGACAATGACGGTATTGGAGATGTATGTCAAGGAGATTACGATAACGATGGTGTACCAGACAATGAAGACGTGTGCCCATATAATCCCAAGATAATAAAAACAGATTTCAGTAAATTTGTCAATGTCAAACTTGATCCTAGAAGTGGAAAGAAAGATCAGCCTGAATGGAGTGCATCCAAAAGGGGAGATGAAGTATTTGTGGGGAGAAACAGTAATGTTGGGCTGTTTATAGCCGATCCAGTCTTCGAAGATGTTCAATTCAAGGGAACAGCATATGTCAACCTCAAATACGCTGATGACGATATTTGGGGCTTTGTTTTTGGCTATCAAGACTTCAGTAGTTTCTTTTTGCTATCCTGGAAACAAGCTGAACAGGTTTACTGGAATGTTCGTCCCTTTAGAGCAAGGGCAAAACCATGGCTCAATCTTAAGAAAGTGAAATCCCAAACTGGTCCGTCATCAGCAATGCGTAATTCATTGTGGCACTATCAAAGCGTCCCTAAACAGACTAAAGTTATGTGGGAGCAAAAAAGAGGACGTGGATGGCGAGATAAGACTGCGTATAGGTGGGAACTAAATTACACTCCTTCAAACGGTTATCTAAGAATCAAGATGTGGAAAGGCACAAGTCCTATCATGGACACTGGGAGATTACGAGACACTGCTATTCGTGGAGGGCGACTTGGGTTCTATAGTTTCTCACAGGTCCACGTCATCTGGTCAGATCTGTCTGTAAGGTGTCTTGACAATCCATGAGGGATCTGAAGTGGTGGAACTGTGCAAGCTAAAACTGATTACAAATGATAACCAATTGCAAAATAGATCCACACAATTGATGGAAGAGCCAAATACAAGTATTATACTCTACCTTAAAGTTTATAGACTGTATTCATTTAAACACACGAGTTACAAAATGAGAAGCAAGGGAAGACAATGCACAGTGGTGGAATATAGTGTGCTCAACATGAGTTTAACATGGAAGGTTTACAAATACACACGTAACATATACACATGTAACATACATAGATGCGTGGAGCAAGAAGTGGAAATGGTTTTATGCTAAAAGGAGGTATCAAGAAAAGAATAAAACCCAGAAGAATTCTAGTCACAGATGGAAATAATAGTCAAATACAGCTAAAGGCAACAAGAACAATAATTATTACCAGGAAAAACAACAAAGAAAATGTGGGACAAAGAGTGCTCCATTTTGCTATTGCTACAACACCTAATAACATATATAGACAGTATTATCAAAGGTTAGCTAAAGCATCACTTGGAAACAATATAAAATATATATAGATTAAAGGGTTTCTTCATTCAAATTTGTCTTCCAAACTCTTTCCTAGCCACTGTTTGTTGGCTGCAAAGTTAGCCACGGCAGTACAGTACATGTACTATGTGCAATACCTTCTTGAGTTTGAGGACATGATCTTGAACACCCTTGTCCAATGGTGACAACACCATATCTTCAAGCAGTCAGCAAATATAATAAATTAATTGTAATTGTTTGGTAAGAACAAATACCATGGACCAGATATGCAAACGTTACATACTGTGGTATTAATGTAATCTACGGCTGCGAGGTAGACTAGTGTAAAGGTGGATCATCGTTTCTGTATGCCACAACAACTTTATAAATGTCAAGAAAATAATTTCACAACAAAAGGCAACTGTACATAAAATACAATAATATCTCCGCATTTTTTTTAGAGAAAAAAGATTTATTAGTTAATGCATGCTATTGAGGTTTTTCACACTGGCAAGACATTCTGAAAAATTGGTTTTATCTGAAAAATGAGTTTACAGTCAAATTTATCATATCAATATTAGTAAAATTGTGAAGTTTCGTATAGATCGCATGTAAACTATCGAAGATATAGATTATTCAAAACATGAAATTTTAAAAAGAAATGTATGTTGGCAGGCAAATTTTGTCTGCCAGCATAAATTTCCTTGTAAAAATTTTAACTTCAAAAATTGAAATCTTCTCCAGATTAGGGATAATCTTTACGAATATTCACGATTTTACTAATATTGATACAAGAAATTGAACTGTAAACTCCTTTTTCAGATAAAATAATTTTTTAAGATTTCTTTCCAGTGTGAAAAACCTCAATAGGGTTTGTAACTTTATTGCTGAGTTGCAACAGCTGTCACAGGGGCAGATCCAGGATTATTTTTAGGATGGGGTGCACCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49747	Cartilage oligomeric matrix protein OS=Homo sapiens OX=9606 GN=COMP PE=1 SV=2
Q9R0G6	Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2
P35444	Cartilage oligomeric matrix protein OS=Rattus norvegicus OX=10116 GN=Comp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05735 all species →	TSP_C	Thrombospondin C-terminal region	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR008859 all species →	Domain	Thrombospondin, C-terminal	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR017897 all species →	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199 all species →	THROMBOSPONDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene02838.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.