Gene detail

Detailed information of gene02892.t1 in Actinoscyphia liui

Genomic Location: chr1:43916239...43922915
NR annotation: XP_020915989.1, lysosomal acid glucosylceramidase [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene02892.t1

AAACAACTTTACTGAAGTTTCCTCCTCTCTTCTTGTAATATTTCTTGAAAAAGATATTTACTGGCCATCATTCTGCAATCATGCTTAAGGCATTGATCATATACTTAGTTTTAAACAGTCTAAACGTCGGAAAAGCTTATTCTCCTCCAAAGTACTCGAGTTGCAACAAGAAAGATTTTGGCCATGGTTCTTTTGTGTGCGTTTGCAACGAAAATGGGTGTGATCAGTTTGAAGAGACAGGATCTTCGCCTTTAAAGCCTGGACAGTTTGCACAGTACACGAGCTCCAAAGCTGGTGAAAGATTTAGTTTAGAAATTGGAACGTTTAATAAATCATTGGCTTTTGATTCAGATAATTCAGAGATGACATTGACTGTGAATACATCAGTTACTTATCAGAGTATACTTGGGTTTGGAGGTGCTTTTACTGATGCAGCCACCATGAACATTCTTAACATCAGCTCAAACCTACAGGAAAAGCTGCTGCAATCATACTATTCAAAGGCTGGCATCGAGTACAACATTGGCCGCATCCCAATGGCAAGTTGTGATTTTTCCACAAGAGAGTATTCCTATGATGACGTCAGTGGAGATTTTTCACTGAGTAACTTTTCTCTTGCTGAAGAAGATTTAAAGTTTAAGATTCCAGTGATGGAGACTGCGATTAAAATGAGTGGTGAACAAGAAATATTGTTCTTTGGAAGTCCTTGGTCTGCTCCCGCTTGGATGAAAACAAATGGGAAAATGACAGGCTTTGGTCAGCTCAAAGGGAAGGCAGGGGACAATTACCACAAGACATGGGCAATGTACTTTGCCAAGTTCATTAAAGCCTATGAAGACAAAGGAATAAAACTATGGGGAGTAACTGTACAAAATGAACCATCTGATGGTTTTATACCTGGATTTTCCTTCCAATGCATGGGACTATTACCTGGACAAGAACGAGACTTCATAAAGTATGACTTGGGGCCTACACTTTCACAGGAAGGGTACAAGGACGTCAAGGTTATGATGCTAGATGATCAACGGATATTCCTCAACTACTGGTCTAAAGCTATACTTAGTGATCCTGATGCAGCTAAATATGTGTCTGGTATCGCACTACATTGGTATTGGGACTGGCTTACACCTGCAGCAGACCTTACAAAAGCACATGAAATGTTTCCTGATCATTTCATGCTAGCCACAGAAGCCTGTGTAGATAGTAGTATTCTAAGTTCTGATAAGCTTTCAAAAAAGGGAGCTGTAGTTCTTGGTGACTGGAGCAGAGGAGAGAAGTACAGTCACAGTATCATTGAGGATCTTTCACACTGGGTCGTAGGATGGGTTGACTGGAACCTGGCACTCAACATGATAGGGGGTCCAAACTGGGTGAAAAACTTTGTTGATTCTCCAGTTATTGTGGATGCAGAGAACAAGGCATTCTATAAACAGCCAATGTACTATCACCTTGGACATTTTGCAAAGTTTGTCCACAGAGGATCCAAAAGAATTGCCATTGAATCATCAGCTAAAACATCACTGGAATTCATAGCATTCATCACTCCCGACTCTACTAGAGTTGTAGTTTTGTTAAATAAAAGTGATAAGCCCGTAGCTGTAGATATAATTGACCCAGAGCAAGGGAGAATTGCTACCACAATACCTGCTTCTTCTATACAAACACACCTATGGGATAAGCCTGCTGCATTGTGAATTAGGTGACGTTCTATCATCTCAGGAATAACATTGGAACTGACTATAATCATCACCTTAAAAAAAAACAAGTTAAAAACACTCCTTTATAAACTTTCTTATACTTAGATTTTCAGCTCTCATTCAGTTTCATATTATAATTTTATTTTAATTCGTTTTTCTAAGAGAGCCTAATTTAGCACTTAGAACTTTACGCTGTAGGCGCTTTATAAATGTATGTATGTATGTACATGTATGTATGTACCTTTACCAAGATCATACAGTTGAACCTCCCGTAAGCGGACACCCTTGGGACCCGGGGGGGGGGGGGGGGGGGGGGATACTCCACCCAAATTTGGGTAGGGGTGTGCTGCTGGGTCTCTGAAACCCTTACCCTGTTTAAGACAAAAAAACTCAAATTTCCATACCCTGTTCAAGACAAAGTGTTAAATTGTATAGGTATCCCTCTATAAGACAAATCCACGTGAATCCACGTGTCAATAAGTCGTCGGTGGTCGGGTTAGAGGTCAGGAATAAACTGATTACAAACCGATATCTGTCAGGTCGAAAGTGATAAATACCATACCCTGTTCAAGATCTGTCGATGTAAAATGGATACCCTGTCTAAGAACAGAAACTCGAAAAACCCCGTATAGTCCATATATGGGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q70KH2	Lysosomal acid glucosylceramidase OS=Sus scrofa OX=9823 GN=GBA1 PE=3 SV=1
Q2KHZ8	Lysosomal acid glucosylceramidase OS=Bos taurus OX=9913 GN=GBA1 PE=2 SV=1
P17439	Lysosomal acid glucosylceramidase OS=Mus musculus OX=10090 GN=Gba1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003972 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17189 all species →	Glyco_hydro_30C	Glycosyl hydrolase family 30 beta sandwich domain	Domain	Interproscan
PF02055 all species →	Glyco_hydro_30	Glycosyl hydrolase family 30 TIM-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR001139 all species →	Family	Glycoside hydrolase family 30	Interproscan
IPR033452 all species →	Domain	Glycosyl hydrolase family 30, beta sandwich domain	Interproscan
IPR033453 all species →	Domain	Glycosyl hydrolase family 30, TIM-barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11069 all species →	GLUCOSYLCERAMIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004348 all species →	Molecular Function	glucosylceramidase activity	Interproscan
GO:0006665 all species →	Biological Process	sphingolipid metabolic process	Interproscan
GO:0006680 all species →	Biological Process	glucosylceramide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01201	GBA, srfJ; glucosylceramidase	EC:3.2.1.45	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.