Gene detail

Detailed information of gene02935.t1 in Actinoscyphia liui

Genomic Location: chr1:44522310...44539528
NR annotation: XP_020915968.1, arachidonate 5-lipoxygenase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene02935.t1

ATGGACGGGATGGCTAGTATAGTCTTCCTATGCTCAGTGGTATTTCTTGTGGCTCTTCCTGGAAGCAAAAGTGACGTCCACCCTGCACCAGGGAAAGGCAAAAATGTCTGTTCTTACGACAAAATCAAGACCAGATTTGTGATGAGGAGAAATGTTACTACCGTTAAAAAGAGCGCAGCAAAAAAATGCGATATGCCAGGCTACCAAGACTTGATGTGTCGAGAAACAAGAATTGAGTCGCGTATTTACTGGTACCCATCTCGACAAGACCTCCACTATGTATCATACAATTGCTGTCCAGGATGGCGGGGATACCAAGAGGGAGTTGGATGTCTGCAAGAAATTCCTTGTCAAGTCAAGATATCGCAGAAAGCCAACCCTCACTGCAAAACCAAACGAATCAAAGAACTACTTACCGCTAAGGGCACCTACATACTAAGCACTATGCAGGGACTACCTTTTGCATTAAGTAACATCGATGCAATGAAGCTGGTCAACCTATACCTGGCCGATCCATTCACTCAGAGTTGGATGAAGATTTACATTTATATGTTGAAGCTGAACAAGCATTTGATCGACACGTTCCCTCTAACGCACAAGAAAGAATTTACTTCTGTCAAAGATTATGAAAATGTTTATCACTTTTTTATAAATAAGATGAAAAGCAATCCTATGACGAGAAGATTTTTTCGTTTCCCGTTCGACACCATGCCATTTAAGAGTGTAGTAAATAACAGCACATGGAAGGAGGATCGTGTTTTTGCCGAGTTTCGTTTAGCTGGTATCAACCCCATGTGTATCCAACGAGTTACTACTAAACAAGGTGTAGGGATCAGGTGGTCAGACCTGGCAGGCCGTCTAAATCAGAATTTTGATTGGGATAAAGTGATTCAAAGAGCCTTTGGTCAATCTGTACCTTTACAAATGATTATTGGCGATGGGTCAGTGTTTGTGTGTCAGTACCCATTGTTTGATAACCTGGTTAATGTACCAGACATAACCGAACCAAGACCTTTTCGTAAGATGTGGAAATCCATGTCACCCATCGCTGTGTTCGTTTCACGACCAGGACGAAAAGGGCGACCAGCTTCACTAATACCAGCCGCTATTCAACTAGATAGCAAACCAGATTCTCCAGTCTACACACCAGACGATGGAGACCTGTGGATGCTGGCCAAGAAATCGTTTGAAGTGACGGACTTTGCGTATGTCGAGATGGTGGAACATTTACTGAAGACACACCTTATGATGGAACCGTTTTGCGTGACGATTTTACGACATCTTTCGTCCTTACACCCTCTGCACCAAATCATGAAATTTCACTGCAGGGGTCTTCTTCCCAACAACAAGATTGGTTTTCCTAAACTCATCGCTGACAAAGCCTACATGCACCAGCTGTATGCTATCGGGAATCATGGCTCAGTGCAGTTACTAGTGAAAGCCTTTAAGACAATGACATGGAAAGATACTGACTTCAAGCACAATATCAAGAGCCGCGGTCTAGACAACAAAGACAAACTGCCATACTTCCCTTATCGAGATGACGGCGAAGCTCTCCATCGTGCAATAAATGGTTATGTTGATGAATATATCTCACAATATTATCAAAGTGACGCTGATGTGATAGCGGACGAGGAGCTCCAGGCTTTAGCTAACGAAATGTCAGTAGCAGGGACGGGTGATGACGGAGGAAATGGCAAGTTACGAGGATTTCCAGCAAAGATCACGACCACATCTCTCCTGAAGGACATCATAACACGACTGATCTGGACCACTAGTTGTCAGCATACAGCAGTAAACTACCCCATAGCAGCGTACGGAGCATTTACCCCCAGCATGCCTACTAAGATATATGATGACAGTAGAGTACCAAGCGATAAGTTTAATCTATACAGACTACCTAATGGCAATACATCGGCTATTCAAGCAGGAGTAGCCATGAGTCTCGGGTCGTTGCATTTTGACGATCTGTTAGACTATGGACCATATCTAAAGGACAAATCTGGTAGCAAGATAGTCAAGAAACACTATCAACGACTAAACAGTGTTGTCAAACCTATACTTGATAAACGCAACGAACTACGGTATCAAAATGGGTATCTAACGTACCCTTTCTTAACGCCTGGATGGGTGCCTAATAGTATTTGTACATAG

Transcript

gene02935.t1

ATCAGATCTTTGTTTCTTCGCCGGAGTGGAAGAAGTTGGATTGGAATCTTCACACTTTCGCTTCAACGACGGCCTTCCGTTACAGGATTCGTTAGAGTGTTCTGAGCGCTGTTAAACTGGTACTGAAAAGAACACCCTGGAAACGTATTAGAATGGACGGGATGGCTAGTATAGTCTTCCTATGCTCAGTGGTATTTCTTGTGGCTCTTCCTGGAAGCAAAAGTGACGTCCACCCTGCACCAGGGAAAGGCAAAAATGTCTGTTCTTACGACAAAATCAAGACCAGATTTGTGATGAGGAGAAATGTTACTACCGTTAAAAAGAGCGCAGCAAAAAAATGCGATATGCCAGGCTACCAAGACTTGATGTGTCGAGAAACAAGAATTGAGTCGCGTATTTACTGGTACCCATCTCGACAAGACCTCCACTATGTATCATACAATTGCTGTCCAGGATGGCGGGGATACCAAGAGGGAGTTGGATGTCTGCAAGAAATTCCTTGTCAAGTCAAGATATCGCAGAAAGCCAACCCTCACTGCAAAACCAAACGAATCAAAGAACTACTTACCGCTAAGGGCACCTACATACTAAGCACTATGCAGGGACTACCTTTTGCATTAAGTAACATCGATGCAATGAAGCTGGTCAACCTATACCTGGCCGATCCATTCACTCAGAGTTGGATGAAGATTTACATTTATATGTTGAAGCTGAACAAGCATTTGATCGACACGTTCCCTCTAACGCACAAGAAAGAATTTACTTCTGTCAAAGATTATGAAAATGTTTATCACTTTTTTATAAATAAGATGAAAAGCAATCCTATGACGAGAAGATTTTTTCGTTTCCCGTTCGACACCATGCCATTTAAGAGTGTAGTAAATAACAGCACATGGAAGGAGGATCGTGTTTTTGCCGAGTTTCGTTTAGCTGGTATCAACCCCATGTGTATCCAACGAGTTACTACTAAACAAGGTGTAGGGATCAGGTGGTCAGACCTGGCAGGCCGTCTAAATCAGAATTTTGATTGGGATAAAGTGATTCAAAGAGCCTTTGGTCAATCTGTACCTTTACAAATGATTATTGGCGATGGGTCAGTGTTTGTGTGTCAGTACCCATTGTTTGATAACCTGGTTAATGTACCAGACATAACCGAACCAAGACCTTTTCGTAAGATGTGGAAATCCATGTCACCCATCGCTGTGTTCGTTTCACGACCAGGACGAAAAGGGCGACCAGCTTCACTAATACCAGCCGCTATTCAACTAGATAGCAAACCAGATTCTCCAGTCTACACACCAGACGATGGAGACCTGTGGATGCTGGCCAAGAAATCGTTTGAAGTGACGGACTTTGCGTATGTCGAGATGGTGGAACATTTACTGAAGACACACCTTATGATGGAACCGTTTTGCGTGACGATTTTACGACATCTTTCGTCCTTACACCCTCTGCACCAAATCATGAAATTTCACTGCAGGGGTCTTCTTCCCAACAACAAGATTGGTTTTCCTAAACTCATCGCTGACAAAGCCTACATGCACCAGCTGTATGCTATCGGGAATCATGGCTCAGTGCAGTTACTAGTGAAAGCCTTTAAGACAATGACATGGAAAGATACTGACTTCAAGCACAATATCAAGAGCCGCGGTCTAGACAACAAAGACAAACTGCCATACTTCCCTTATCGAGATGACGGCGAAGCTCTCCATCGTGCAATAAATGGTTATGTTGATGAATATATCTCACAATATTATCAAAGTGACGCTGATGTGATAGCGGACGAGGAGCTCCAGGCTTTAGCTAACGAAATGTCAGTAGCAGGGACGGGTGATGACGGAGGAAATGGCAAGTTACGAGGATTTCCAGCAAAGATCACGACCACATCTCTCCTGAAGGACATCATAACACGACTGATCTGGACCACTAGTTGTCAGCATACAGCAGTAAACTACCCCATAGCAGCGTACGGAGCATTTACCCCCAGCATGCCTACTAAGATATATGATGACAGTAGAGTACCAAGCGATAAGTTTAATCTATACAGACTACCTAATGGCAATACATCGGCTATTCAAGCAGGAGTAGCCATGAGTCTCGGGTCGTTGCATTTTGACGATCTGTTAGACTATGGACCATATCTAAAGGACAAATCTGGTAGCAAGATAGTCAAGAAACACTATCAACGACTAAACAGTGTTGTCAAACCTATACTTGATAAACGCAACGAACTACGGTATCAAAATGGGTATCTAACGTACCCTTTCTTAACGCCTGGATGGGTGCCTAATAGTATTTGTACATAGTCTGACACGAACGGTGATAGTAAACAATCTGCACCGTACGGTAAGTGGTCGGTAAGTGGTCGGTAGGTGGTCGGTAAGTGGTCGGTAAGGTAACGGTAAGGTAACGGTACGTGGTCGACTAATCCAGTTACCGACCACTTACCGTACGGTGCAGATTGTTCACTATCACCGACACGAACTGAAAGAACTTAATGTTTGTAGATATATAGCAAGAACTGCATGGAATTCCACTTTCGAATGATTGATAAATACCAAATAATGATAACTGATTGCTGTACTGTTTCTCCTTTGCTAATCAAATAGCCATAATTCTGGTAGAACTTAAACTACAATACTGAGTTATCTGTAATTGTAACCGTTGTGTGTTAGCCTCATGAAATATGGCTTATTATTGTACTAGTGTAATGGATATATGAAGATAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09917	Polyunsaturated fatty acid 5-lipoxygenase OS=Homo sapiens OX=9606 GN=ALOX5 PE=1 SV=2
O16025	Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1
Q8GSM2	Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare OX=4513 GN=LOX2.3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000306 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00461	ALOX5; arachidonate 5-lipoxygenase	EC:1.13.11.34	Toxoplasmosis	ko05145	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.