Gene detail

Detailed information of gene03026.t1 in Actinoscyphia liui

Genomic Location: chr1:45617643...45640284
NR annotation: XP_020897438.1, cytosolic carboxypeptidase 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene03026.t1

ATGAGTAAGTCCGGAGCGAAAAGTGCAAGAATTGGAACATTATTAGAACAGTTACAAAAACTGTGCTTAGCAATGTCTGAGAGCAAAAATGAATTGGATAAAGACAGTGAGCAACTACGCTATATCACTAACAAAGTTCAGCAAATGCTCTCAACACAAGAAAAGTGCAGAAAAGACTTGATGGCAAGATTTCCAGATGGAATTTCCACACTTCTACTTATTCTAGAGATGTCAAATGATTCACAGCTCACTCTAAATGTGATGGGATGCATCTCTGAGTTGTTAACATCAGGAAAAAGAGCCTCTGTATTAGCTGCTAAAGGGACAGTTGACATTGTATTAAAAGTTATTGTAAATGCTAGTCATGAAAACCCACCTAATGAAGAAGTGATTGTATTAGGCCATGTGTTACTCACTAAAGCTGGGCCAAAAGATCGTAAGTTTTGTTTGAAGGCGAGACTAACTGGAGCATTACAAGTAACCATGAGTACAATACGAAATAACACCAGCAACTTTAGGATCCTTCAGTGTACCTTGGTAGTGATGAAGCAATACACTACAAATGCGGTTAATTGCAACAACCTGGGCAAGGCTGGAGCTGTTTCTGTTCTGTTCAAGATTGTAACTGTTTGCGGACATAAAAGAATCACATGTTTAAAACTAGCGTTGGACGTTATAGCGGCACTTGTCAAATCAAGAACCAGTGCCAGCAAAGCTGTTAACAGCGGCGCAGTCCCCGTCTTGCTGCAAATGTTCTCAGATTGGCATCGTACAGACCATCATAATAGACAAACTGGAGTAAGGAAATCCATTGTAGGCGTGCTGAAAAGTATTACTATGACAAAATCAGGCAAAAAGGCGTTCATCCAGTCTGAAGGAATCAAGATGTTATACTCCTTGTCTCTAGAATCTCTTGAAAGTCGCGAACTCGATAGTGTTAATGTTATATGCAGTCAAATCCTAAGACGATGTTTCCCCAAGAACAAACTACCGGTCCCTTGTCCATCGTGTCCTTTATCATTCCCTATCCTGGACTTAGACAGTGCCAGTACTCATAAAGCCAACAGTGAAGGAGAACGGATAGACGACAGTGCAGAGGGCGAGTCTAGTGAATTAGAATCAGACGATGAAACTAGTGGATCAGCTAAAGAGGAGAAAGAAGGCGCTGGAAGTCAAGCTCCCTCGTTGGATAACTTAGCAACCACTACAACAATGAAACAAAAACCACGTGACGACCTTCAGATGTACGACAAGTTTTTCCCTGAACAGTACGAGTATCAGATTGACGATTCTATAGACGACGAACCATTGCTGCCCAATACCATCATGATCCCTACAGCACCAGATGACCCTCTGAGCCCAATGTCAAGTTTTTGTAATTTATATACGTCTAACAGCGAGCCAATAGTATCGCCGATGGACGGCAGTAATGACTGTCAAGATCCGTATGGACTAAGTACCACAATCCCTCCATTGGGAACCAGTCCACCACAGTCGACAGCCTCGCCAACAACTCGTGAAAGCAGCAGTCGTTCGTCATCGTCGAGTGACATACGAAGCGTGTTACCGATAGTAAAGCAAACTATACCTGAAATACATGGGCACTACCCTCCATGTGAACCTGAACCACTTGGACAGAAGAAAAGTGCTTTACAAAGGGCGATGATTTTCCGCGACATCGATCGACTCATTCAACCACAAAAAGTCATCGACAAAGTCGTGTACGACTTGGATGCGTTGTTGAAACAGGACAATACTGAAACCAACGACACATTGAACCCTCAGTCAAAACCAGACAACGCATCGAGAAAAGGCAGCGCTAGTAGTAACTCAAGTACTTCAGATTCTGAGAGGATGTCAAGTAGTGATTGTAACAGCAGGACTTTGAAGTTTGAATCTCGATTTGAAAGTGGTAACCTACGTACAGCAATACAGGTTCGTGAGTACGAGTACGACCTGATTCTCAACCCTGATATCAACTGTAGGCATCATCACCAGTGGTTCTACTTTGAGGTCACCAATATGGATGCTGATGTGCCTTATAAATTCAATATTGTTAACTGTGAGAAGATCAACAGCCAATTTAATTTCGGTATGCAACCAGTTTTATACAGTGCCCAAGAAGCACTCAATGGTCGCCCTGGCTGGATACGAGCTGGAACGAATGTTTGTTACTATAGAAACTATTTTTGCCGCAATCCCCAAGATCGCGCTGCAGGAAATCAAAAGAGTAAAACGTTCTTCACATCTACGTTCACCGTTACCTTTACATATTCAGACGACACGTGTTATTTGGCTTATCATTACCCATACTCCTTTACGATGCTACAGGACCATTTAGGTCGCTTAGAGTCGTCGATAGACAGTGAGATATTCTACCGTCGTTCCACACTCTGCCACACTCTAGCAGGCAACCCTTGTGACGTCATCACGTTAACAGCAGCGCCACGACGTAAAGACTCGTTCTCTCTTGAATCGTTCAAAAACAGACCATATGTGTTCCTGACCTCACGCGTTCATCCTGGCGAAAGCAACTCCAGTTGGGTTATGAAAGGTGTGTTAGACTTTTTACTTAGCAACTTGTACACTGCTAAGAATCTAAGAGAGAGGTTCATCTTTAAGATTGTACCCATGTTAAACATAGATGGTGTTATTAATGGATGCCATCGATGCGCGCTTGCAGGGGACGATCTTAATCGACGATGGATGAACCCTAGCATGATACTACATCCTACCATATACCATACCAAGGGTTTACTACAGTACCTACAGAGTATAGATAAGACTCCTATAGTTTTCTGTGATTTCCACGGCCATTCAAGAAAAAAGAACGTTTTTATCTATGGCTGCAGTAAAGCTACAACTATCACACCATCATCGTCGAATTCTTCTAGTGATGTGCAAAGAAATGAGTCAGCTGTCAATCATGACCAGTCAGCGGAAGTATTATCAGAGACGGACTCGACGAGTAGTGTGGATGCTAACGATGCGGTCGAGGATCTTGGATATCGAACATTACCCAGAGTGCTTCACAACATTGCGCCAGCGTTCTTTCTGGGCAGCTGTAGCTTTATTGTGGAGCCGTCCAAAGAATCGACAGCACGTGTCGTGGTTTGGCGGGAACTTGGTGTTTTACGCAGCTACACGATGGAGAGTACTTACAGTGGTTGTGATCAGGGCCCATATAAGGGCTATCACCTTGGTACACGTGAGCTAGAAGAAATGGGGAGGTTCTTCTGTGCAGGACTCCTACGAATTGCAAGACCGTTTATACATCGAGATCAAATCACCCGCCCTCGTTCAAGTGACAACACCGAGACTCGCGAAACTACTGCATCAGAAAACTGGATTCGTTCAAGTGAACTCTTCGTACCACTGCCTGCCGTTCCATGCGACTACACAGGCAGTAATGAAGAAATTGTATGA

Transcript

gene03026.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4U2V3	Cytosolic carboxypeptidase 1 OS=Danio rerio OX=7955 GN=agtpbp1 PE=2 SV=1
Q641K1	Cytosolic carboxypeptidase 1 OS=Mus musculus OX=10090 GN=Agtpbp1 PE=1 SV=2
E1C3P4	Cytosolic carboxypeptidase 1 OS=Gallus gallus OX=9031 GN=AGTPBP1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003584 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18027 all species →	Pepdidase_M14_N	Cytosolic carboxypeptidase N-terminal domain	Domain	Interproscan
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050821 all species →	Family	Cytosolic carboxypeptidase	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR040626 all species →	Domain	Cytosolic carboxypeptidase, N-terminal	Interproscan
IPR033852 all species →	Domain	Cytosolic aminopeptidase 1/4	Interproscan
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12756 all species →	CYTOSOLIC CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035610 all species →	Biological Process	protein side chain deglutamylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23435	AGTPBP1, CCP1; cytosolic carboxypeptidase protein 1	EC:3.4.17.24	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.