Gene detail

Detailed information of gene03048.t1 in Actinoscyphia liui

Genomic Location: chr1:45916680...45931082
NR annotation: XP_020907845.1, uncharacterized protein LOC110245890 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene03048.t1

ATGTCAGATATCAACGTTCACGTGACCAACATAGATGGAAGCTTAAATCTTGAATTGGTCTTGAAGACTCATGGCGACCCTGGAGTACTCTTGAAAGCGATTCAAGAATTGGTCTGTAAAGAGGGAATAGTGGCAGAAGGAGCACAAGACGGATCAATAGAGATTCAGCTACGAGTGAAGGATCTAAATGCACTTGAAGATTTCTGGAAAAGTTATCAAACTGGTGAGTTGAGGAAGAATCTTGAAACAGTTTTACTCACTGAAGAAATGAGGAAACTAGGAGAAAAAGCTGAGCTCATAGTAACAGTACCTGAAGATGAATATCTGCATGCAAGGTGCTTCTTAGAGGAACTGCTGCCTTATAAGAAAAAGAATAGTGCGAAAGATACTGTTCTCCGTACCGCAGAAATAACGGCAGAGGAAGTAGAAGTACGCGAGGGCTCAATAGAGATTCAGCTACGAGTGAAGGATCTTGGTGCGCTTGAAAGTTTCTGGACAAGTTACCAAACTGGTGAGTTGAGAGACGATCTCGAGAAACTCCTAGTTACTGAAGAAATGAAACTGGGCGATAAAGCTGAGCTTAAAGTAACAGTGCCTGAAGATGAATATCAGCATGCAAGGTGTTTCTTAGAGGAACTGCTCCCTTATAAGACAAAAGATTGTGCAAACCACAATTGTGTAACAAATGCACATGCACATGGCCTGCCCAAAAAGACAGCTAATTTTATTGGCCGAGAGAAGTTAGTGAGTGACATGGCAGAATTGCTGATATCTCAAGATAAGCAAATGGTTGTTCTTTTGGGTCCTCCGGGATATGGCAAGTTTACTGAAACTTTCAGAACTTTTTTACTAACTATATCAAATGCGATCGTGGAATTAGGCAAACTGAAAGAACTAAAGTTTTTGTGTAAAGAACTCATTCCGAAAGGAATATTGGAAGAGATCAAGACGTATGATTTGTTTGATGTTTTGATTAGTAAAGTCAAGTTAAATCAACATGACACCAGTCTTCTTCAAGAGCCTCTCATTGGTGTCGGTGAAGTGGCGCCATGTGCGAAAGTAAGAGATTATAGATCACAAGATTGTGCAAGCCACAATACAAATGCACATGCATATGGCCTGCCCAAAGAGACAGCTAATTTTATTGGCCGAGAGAAGTTAGTGAGTGACCTGGCAGAATTGCTGATATCTCAAGATAAGCATATGGTTGTTCTTTTGGGTCCTCCGGGATATGGCAAGTCTACTGTCGTCACTCATGTTGGATATACTCTGAAGGAGAGAGGGGTCTCTGTGGTGTTTGTGTCTTTGAGGAAAATCACTTCAATGCACTGTATGGGAGAAGAGATCTTGAGATGCATTGATCCTGTCAAGTATTCTTCACTCAGTGACAACATTCTTGATAAAACCAAACATTATCTTGTTAATTCTGTCAAGAATCAAACAGTTCTAATTTTAGACAACAGCGAAGATATCCAAAACTCCGATTCTTCAGTTGAGTTTGAAGCATTCATTGAATATGTAGCAACCACAGCCGCAAATGTGAAGGTGTTATTCGGTACAAGAAAGAATTTCATAGCAATAACATTTGAAAGTGAAACAATCCAACTCTCTTGCCTTGATGACTTTTCATCAATTTCCCTGTTGTCTTACTTCGCCTCAGTGGAAAAAGACAGCAGTGATGACATGAAGAAACTTGGAATCCAATGTAAGGGTATTCCACTGTTGATTAAGATGGCTGGCCGTAGAGTTAAACATGGGTATAAGGCATCACAGCTTGCAGAGGATCTAAAAAACAAGCCTTATGATATTTTGAACTTTAAAGGAGACAAAGTTCAAGATTTAACGACCTCTATGAGAGTATTCCTTAAATCCTTTGATAGAGAAATGTTACTTTCTCTTCTCCGTCTGTCAAATTTTGCAACACAATTCACAGAAGAAGATGCTTGTAAAGTATTTGCTAACATTGATTGTATCCAGTGGAGAAGCATGGTGTGTTGTCTTCACGAAAATGCACTTCTTCAGCCTGAAGGTGAGCACAGATACAGCCTACATCCTCTACTACAGATGTATTGTAGAGAGGATCAGCAATACTTGAATATTACCATTGAAGGACAGAAGTCAAGGGAAACATTGACCGGCCATTACTTAGAAGAATTGGAAAGCATCCACAAACAGTTTGTTAGCAAAGAGTTTCAGCAAGCGTTACAACGATATGATTCCATAAGAATGAATCTAGAGCAAGCAAGAGAAAATGCAGTTAAACTTGGAACCAAGAAGATGAAACTAAGATGCATTGATGCCTATAACAATAGTGTCAATCTACTTGGTAAAATCATGGAGCCAACTCATTGCCTTAAAGTTTATCAGGAATTGTATGAAGAAGCTGATAAACTGAACGACAAAAGACGGATGAGCGAATGCCTGATTTCTTTGGGGTTCATGCATCTCTATGAAGTTGGCCACCAGAAATTTTCTCCACAAGCTTTTGGGTGCTTAGTAGATGCAGTGTCCTTAACACAACAATTCCTGTCCAAGAAAGAAAGACAAACAGAAGCGTATGCACATTGTCAAAGTAAGCTGGGCCTTTGCTATATTGCTAAACCTAACAGTAACTCAGTTGACAGGAAGAAAGGAAAACAACTCATGGAAAATGCTCTTTCCATTCGTAATCAACTTAAAGATAAAGTGTTGTTGGCTGCCAGTTATTGCGACAAAGCCATTGCTGACCGTTTAAGTGGTGACCACGCCCGAGCCATCATAACACTGAAAGAGCATTGTTATCCCGAGTACAAAGATCACTTAGGAGATGATCACCCTTGGGTAGCTAGTGTCCTTGACTACATCTCAGATTCCTGTAAAGTCCTTGGTAAACTCGATGAAGCCGTGAAATATAACGAGATGTCATTATCCATTCGCAAGAATATCCTAGGCCGTCATCAAGATACTGCAAGGTCTTTTGTCCTTCTTGCTGATCTGTTGAATCATCAAGGTAATTTAAGTGAAGCGTTAGATAACTATAAGCAAGCGTTGTCCATACAAGGAGAGGTGCTAGGAATCCATGAAGATACTAGAGCATCATTAAAGGCGATTGATGATATCCTTGGTGAGTTGGGAGATCATGCTGGACAAGAAATGATAAGAGAGCGTGCAGATTCCACTACATGTGAACTCAATCGATATAAAAAAGTACAGAAACAAATTTCTGTAGAAATGCGGAGCAGAACCAGCTTTCACTTGGAAAGGGAACAATTCAAGCTGAAAGTGAAGACGATGTCATTGATCGGCTTTTTTATTGTTCTCGTAATTGCTATCAGTTTTCATTTCATGATTGAAAGATTGTTCTAA

Transcript

gene03048.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691 all species →	REGULATOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene03048.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.