Gene detail

Detailed information of gene03313.t1 in Actinoscyphia liui

Genomic Location: chr1:50972789...50991495
NR annotation: XP_020904886.1, nucleolar protein dao-5 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene03313.t1

CATGGGAGGGCCCGCATCATCCCAGAAACCTACTCCTCGGCGTCGTCTACACTGCAAAGTACCTAGGGTCATCTCAGATCATGTCGCCCCAGTCTCCCAACCGAAACGTTCGCATGCAGCAAGCACAAGAAGCCGTAGGACGAATAAAGGTTCCAGAAGGAGAAGACCAGCCTACAACAGATGTTGATGTGTTTATTTCAACCGAGAGAATAAAAGTCGTCAACTCAGCTAATAAAGATATAATGATGGACCACGCCCTCCGTACCGTATCCTTCATAGCAGACATCGGCGACGTACTGGTCCTCATGGCACGTAGACCGCCAGGAAATAACGAGAATATCCTAGAAACTAAACCGTCCGCCACACAGATTCTAGCCAGTGTTGCTAAGGCTGAAACAGACCCCAAAATGATTAAAATTACTTGTCACGTGTTCCAAGCACCAGAGGCTCAAATCATTGCTAAGAGTATTGGGCAGGCGTTTAATGTGGCTTATCAAGAGTTCTTACGAACTAATGGGATATCAGAGGACACTATTGAAGATGCTGAATATAACTGTGTCTTAGAAGCACAGAAAATACTAGGCGAGGATTTATCATTGCTGTCAGACGCTAGCAAGTCCAGAGAGGTTGTAGTCAACAAGAAGCCCGGGGAGTCGTTAGGGGTTATGATAGTCGAGTCAGGCTGGGGATCCATGATTCCTACAGCCATTATAGCTCATCTCGCCAAGGAAGGTCCAGCTGCTAAGTCTGGACGACTCAATGTTGGTGACCAAATCCTGGCTATTAATAACACTAGTTTAGTGGGTCTACCGTTACCAGAGTGCCAGACTATTATCAAGAACTCTCGTCCAGGAACTAAAGTTGTAATGAAGGCAGTGTCCTGTCCTCCTACCGTCCAGGTAGTGGTCAACAGACCAGACACCAAGTACCAGTTAGGATTTAGCGTGCAGAATGGCATGATTTGCAGCCTAATGCGTGGAAGTATAGCTGAGCGTGGTGGTGTTCGTGTAGGGCACAGGATCATAGAAATCAATGGAGAAAGTGTCGTTGCTACATCGCACCAACACATTGTCGATCTTCTGGCGTCGACGACAGGAGAGATACGTATGAAGACGATGCCAGCTTCAATGTATCGACTGCTCGTCGGTCTAGATACACCGCAATACATATAGTAACACTCCCCCTCACCACCCCCATGACATCGGGAGTAACTGGAACCCCCCAGGCCACAACAAGGAAAGTTATGGACTCTTTAATGTGTGTATACTGACCTCCATGAATGAATTGTTCGGTCTACGAAATGGGATCGTAATGGGACACTGGTTGCAGTCCTTCAGATCATGACTCTAAACAGAGAAGAGCGTAAAATACTTACTATGTTACAATGCAAAGAATCCAAATACTGAGATTACAGAACAAGCTATTTTTAGACAAACAAGATGGCTGCTATGTTCGTATACTTTACCACGTCATTCCCACTACGAAAATGTGCCCACGAGCACCACGTGACAAATAATTGCCATGACAACGAAATGGAGCACCACGTGGCAAATGGTTACCATGACAACGACGTGGATCATCACGTGGAAAGTGGTCACCATGGCACCCGCTTCTTTATAGTTGCTCCATATAGGATTTCACCCAAACAAATGTTTCAACGTGAGCATCACGTTGTATGACAATGAATATGAAAATCGCACGAGAATTGGTTTCCATGACAATGAAATGTCTACAACTGCTGTTTCACTTCCTTGGTAAAATATGGCCCGACGAAATGCACTTTACGCGCATGCGTTGTTTGTGGATCTTGGTAGTTTCTATGACAATGGACTACAAAGGCAGTAGTTTATTTTCAGCTATTACGGTATTCTTGTTTAAAAACTCGACATACATGCGCTAAGAACTGATATTCATCAGAGTAAAGAATACCCCCAGAACCTTGATAATGGACAAGATCCACAGACAGTTGGTTGCTAGCGTTGCGGGATACGATTTTTTTGTAAATATTTTATTTTCCGCTTTCTTTTCTAAATTACAAGACAAATTATTTATGATAGTCTGAGATATCTATAAATGCAAGTTGCCTCTATGGGACAGACAGACAATAGTTGATAGCAGCAATTTTATCCTCAGTATCAGGTTCTCTTGCTCTTACCCCTCCCCTCCCTAAGAGAGTGCTCTCTTGGCCTTAACCCACTTGCCTCTCCAAGAGAGCTCTCTCTTCTTCCCTCCCCAAGAGAGCTCTCTTGGCCTTAACCCCACTTCCCTCCCCAAGAGGGAGGCCTTAACCCCCTCACTTCCCCCAAGAGAGCTCTCTCTTGGCCTTAACCCCCTCACTTCCCCAAGAGAGCTCTCTCTTGGCCTTAACCCACTTCCCTCCCCAAGAGAGCTCTCTCTTGGCCTTAACCCCCTCACTTCCCCAAGAGAGCTCTCTCTTGGCCTTAACCCCCTCACTTCCCCAAGAGAGCTCTCTCTTGGCCTTAACCCCCTCACTTCCCCAAGAGAGCTCTCTCTTGGCCTTAACCCCTTCCCCTCCCCCTGCAAGTAAGCGCCTGGTACTCTGGTTGTGGCATTTTATTTTACTGAAGTATAAATAGTAAATTGTCTCGTGTTAGGTAATGTTTATAATTTATAGCAAGGTGTAAAATATTAAAAGTGGCGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99767	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Homo sapiens OX=9606 GN=APBA2 PE=1 SV=3
P98084	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Mus musculus OX=10090 GN=Apba2 PE=1 SV=2
O35431	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Rattus norvegicus OX=10116 GN=Apba2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR051230 all species →	Family	Amyloid-beta A4 Precursor Protein-Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12345 all species →	SYNTENIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene03313.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.