Gene detail

Detailed information of gene03367.t1 in Actinoscyphia liui

Genomic Location: chr1:52019155...52094533
NR annotation: XP_028519286.1, DENN domain-containing protein 3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene03367.t1

ATGGATGTGCCGACACCAACAAAGTTGTACAACAGCTTGATTGAGATGTGTGTAGTGGTTGGTATGGATCAAGACACAGGATTGTCACCAGTACTTGGTAGCAAGAAAAAAATTCGTGGTTCTTATGACAAGGTCTCATCACTTTACAAGTCCTACTTTCAACCTTTTGTACTGGCAGCTTTGTCTGGGGAGACTGCTGTTTTCATGCATGCAACAAGTGAAATTGACGGAAGTCCTTTCTATCAACCAGGTGCGGTCTCAGGTTCTACCCCAACCAAGAAAGGGGGCAAGAAAGCATGCAAGACACCACGCCGTGTGTCAATGGTACCTGGGGCAGGAGTAGCAAGGCTGCCTGTTGAGAATGAAGTCATCAGCAGCCTGCCCACACTGTGTATGCCAGATGGTGGTCAGATTTTTAATGCTCCAAAAGACAGCTCAATTCATTACTTAGTCCTGACGGACATAGAAGGAACCAGAACATACTGTTGTTGTTTGAAGGTTTATAAACCATACATCGCTAAAGAGAATAAGGACATCCCTGGCCAGTTCAAGCTTGTCTATTCCAACCCTGACTGTGATGAAGAAGCGTCAAGACATTCTGAGTACAGTACATGCTATGTGCCACTATGCTGTTGTCTTATATCAAAGTATCCTTACTTTGGAGTATTCAAAGACTGTTTATCAAGTATGGCATCCAACCTTAAGGCTGAACCAAGGATGTACAGGAATGGACTGATGCAGTTTGTGTCTCAGCTAGCAATGGTCCCTATCCCTTCACCAGGTTCACTAGCAGTCGAATTTACCCTGAGCGGAATCTCTCACTTGATACGACCTGTTGATGAGGCAGGCAAGAGGACTGTGGACATTGAACTCCATTACCCTTTTCTCTGCTTTTCATTGGATGACATCTTGTCGCTCATAAGCTGTGTTCTCTCTCAGCAAAGACTCATCTTTGTGTCATCAAAATATGCAATGTTAACTTTAATAATAGAGAGTATCTTTGCATTCATTCAGCCTCTGTCCTGGAGTTGGACGTATGTTCCTGTATTACCAGATAATCTTGTAGACATGATAGAGGCACCTGGTGTTTATATCCTGGGATGCCACATCAGCCTTAAACCACAGATAGAGAGAGCCATGGCAATGCATGAAATGTCTGATATCATCATTGCTGATATTGATGAAGGCAGAATCAAAAAGGGTGACAATGTTGATGTTCCAAGTATTCCTGCTCGTGTTGCTGATCCCTTCAAGGCCAGAATGAAAAATGTCTCACCAAAATTTGATTTACAGATTGTCCAAAGACCTTCATGTTTGAATCGTCAAGACTTTAAAAAAGAACGTGATTGTCTTGCAAGAGAATTCAACACTGCAGTTCTGACAGCATCACTGGAGATGATGGCCAGAATGCTAAGTGATATGTCCACATACCAGGAAACATACCAACTAGAGCCCTACTTTGATCAAGATGCTTTTATTGAGTCAAAAGCAGAAGAGGACCAGCCATTCTACAGAACTCTTTGCCAAACTCATGCCTTTTCGAGTTTTCTCGAGGAAAGATCACATCAACTTGAAAAGAGGGATTACTTTACTACAATGATGGAGAAAGTAAAGCCGCAAACTACCAGACAAGGTCCATTGAGGAAGCGTAGTTCGTCCGTCAATCCAGCTGTCGCCGCATCAACGTTATCTGTCGACCAAGTCAAGGAATCCCCCTCGTTATCAACAATTCCTCTTCCTCCCTTTACGTTTGAAGGAATATATACAGGTAGCTTTTACGATGCTTGTATTGAAGAGCTGACCACTGTAATAGAGAGTTTAGATAACAAGTCTTCCCATCTGATGGGCAATTACCTTTACCTCAGAGGAATGCTAAAGGTTGCCCGTGGCAACAAAATAGATGGTCTTGGTGATTTATTTTCTCTTTCCACGAGAAATATGCAGCTTTTCCCGAAAGATTTCATTGGTCAACTACTTTCCAAACTCATCGAAAGAGAACAGGCTGAGTTGCGCCAAAGAAGTTTCTTCACAGAGGCGAACAGAATACAGAACCTGAGAAAAACGACAGATTCTTTGAGTGGAGGCAGAGCGAGGGTAATGACGTCAGCCGTGCCTCTTATCCCTTTAGACCAAACTGAATTTGTGAAGCGTGTTACGATGCTGCAAATCACCAACAGCACAGGCACAGCAAAGAAGCTCTTCGACGTTCTCAAGAACAGAATGAATGGACTCGTTGATCCTGATGTCTTCAGTAACTTCTACAGATCTCTTCAAGAGACTGACCGCATTGCTCAATCGATAGAACAATCGATAAAGCTGACTGGAATCACCTTAGAGCCTGGCGAGTCCGTTGTCCTGGTATCCACGTGGTTACGTACATCGACGGCTACCGGAAGAGTAATTGCCACGACTAGCAGGTTATTGTTTATGAAAGAAGGGACACACGTGTGTGAGTCAGTCATGCGCTTTGAGGACATCCAAGACGTTGAGTATTATCAGTACTATGTGGTGATACCACCTGGTGTTGCTGCTCTCAAAATTACAAGCAGAATAAAGTCTGCTGTCGCGTTTATTGTGTGTCTAAAGGATGACAGAACGTTCTGGTATGAGTGTATAAAAGAAATGGGTGCTGGATATAGGTTAGCGGAAGAATTCAAAGACCATCAAAGTATTAAACAGGCTTCACAAAACGTCATCATAGCTGATGCTTTACGTGAAAGTGAACAAGTGGATTATATTGGAAATATCCTTTATCTGAAAAACATTGAAGAGACTGAAATTGAAGCGAACAAACCCTCAGATGAAACTAAAAAGATGTTAATACGAAGAATCGATCCAACACCACAAGCAAATGAGACAGAGAAAACGACAATCGAAGCCATGGTTTTTGCGCCAGAAAGTAAAGAATACGGTAACGAGGCAGAAGTTTGGTGCGGTTTGGCATCTGGTGCTGTGGTGGTTATTGATACGATATCTTGGAACATTGTTGCTGTTTTACGATACACACATAGTAGAGTGAGTTGCCTGGAATCCGTGGGCAAAAACCATATTTGGGTTGGGTCAATGGACACTATTATATATATTATTAACAGGAAAACCAAGCAAGCTGACCAACAGCTACACAATCATCATGATTTCATCTCCCATATTATCAAGACCGAGGAGGATGATGGAACTCTGACAGTCTGGAGTGCAAGTCTTGAGGGACTAATCATTGGGTGGGATCCAGTGACTTTGACTACCAAGAAAACGATCAAGATGGATGGCGCAATGACGTCAATCATTGCTATTGGCAACGCGTTCTGGTGTGTAACAAGAAATGCAGTACTAGTTGTTGCTAGGGATTCTGATGGCAGTAAATACGAAAGTTTAGCAAGTACCACCCCAGACAATGTACCTCGTTCTATAGACTGTATGTGCGCCATTAATAGTGATAATAAGGTGAAACAGGTTTGGACAGGATGTGATAAAAGGGACATTATTGCAGTATGGGATACGACTACCTATAAACACAATGTTCACACCATTATTTGTAAAGACCCCAATGTTAAGTGTAAAGGTTTTACTCAGATGCTGTACGTAGATGGCAAGGTATGGGGTGGTGGTAGAGATGGTACTATTTATATCATCAATGCTCTAAACGTACAGATCGAACAGACTCTTGAGCTTCACAAAGACAGGATCAGATCAATGTGTCTCACTGACACCTCATTTATCTTGACGGGGCCTGGGTCGATCGATGGACGTCTTGCTGTCTGGCGGACTCATCTGCTGACCATCGCTGATAGTGAGGATGGTTTTGAGGTCGTTGAGAAAGGCATTGTTAAGGCAGAGAGTACGAAGAATAGCAGGAGAAAGAAATAG

Transcript

gene03367.t1

GCGCCTTTCGTTTCCCGTCACATCCTGTCCAAATTGACGTAAAGTTATATATATATCGCAATTTCTGAGAATTTTGTAATCAAGGGAAATCTAGAACCGCTTTACTTTCCTTTTGGTTAAAAAGTCAAGACACTAAGAATGGTCCAGTAAACATTCGTCTACACCAGTAATAATATAAAGCGTTAGTATCATGGATGTGCCGACACCAACAAAGTTGTACAACAGCTTGATTGAGATGTGTGTAGTGGTTGGTATGGATCAAGACACAGGATTGTCACCAGTACTTGGTAGCAAGAAAAAAATTCGTGGTTCTTATGACAAGGTCTCATCACTTTACAAGTCCTACTTTCAACCTTTTGTACTGGCAGCTTTGTCTGGGGAGACTGCTGTTTTCATGCATGCAACAAGTGAAATTGACGGAAGTCCTTTCTATCAACCAGGTGCGGTCTCAGGTTCTACCCCAACCAAGAAAGGGGGCAAGAAAGCATGCAAGACACCACGCCGTGTGTCAATGGTACCTGGGGCAGGAGTAGCAAGGCTGCCTGTTGAGAATGAAGTCATCAGCAGCCTGCCCACACTGTGTATGCCAGATGGTGGTCAGATTTTTAATGCTCCAAAAGACAGCTCAATTCATTACTTAGTCCTGACGGACATAGAAGGAACCAGAACATACTGTTGTTGTTTGAAGGTTTATAAACCATACATCGCTAAAGAGAATAAGGACATCCCTGGCCAGTTCAAGCTTGTCTATTCCAACCCTGACTGTGATGAAGAAGCGTCAAGACATTCTGAGTACAGTACATGCTATGTGCCACTATGCTGTTGTCTTATATCAAAGTATCCTTACTTTGGAGTATTCAAAGACTGTTTATCAAGTATGGCATCCAACCTTAAGGCTGAACCAAGGATGTACAGGAATGGACTGATGCAGTTTGTGTCTCAGCTAGCAATGGTCCCTATCCCTTCACCAGGTTCACTAGCAGTCGAATTTACCCTGAGCGGAATCTCTCACTTGATACGACCTGTTGATGAGGCAGGCAAGAGGACTGTGGACATTGAACTCCATTACCCTTTTCTCTGCTTTTCATTGGATGACATCTTGTCGCTCATAAGCTGTGTTCTCTCTCAGCAAAGACTCATCTTTGTGTCATCAAAATATGCAATGTTAACTTTAATAATAGAGAGTATCTTTGCATTCATTCAGCCTCTGTCCTGGAGTTGGACGTATGTTCCTGTATTACCAGATAATCTTGTAGACATGATAGAGGCACCTGGTGTTTATATCCTGGGATGCCACATCAGCCTTAAACCACAGATAGAGAGAGCCATGGCAATGCATGAAATGTCTGATATCATCATTGCTGATATTGATGAAGGCAGAATCAAAAAGGGTGACAATGTTGATGTTCCAAGTATTCCTGCTCGTGTTGCTGATCCCTTCAAGGCCAGAATGAAAAATGTCTCACCAAAATTTGATTTACAGATTGTCCAAAGACCTTCATGTTTGAATCGTCAAGACTTTAAAAAAGAACGTGATTGTCTTGCAAGAGAATTCAACACTGCAGTTCTGACAGCATCACTGGAGATGATGGCCAGAATGCTAAGTGATATGTCCACATACCAGGAAACATACCAACTAGAGCCCTACTTTGATCAAGATGCTTTTATTGAGTCAAAAGCAGAAGAGGACCAGCCATTCTACAGAACTCTTTGCCAAACTCATGCCTTTTCGAGTTTTCTCGAGGAAAGATCACATCAACTTGAAAAGAGGGATTACTTTACTACAATGATGGAGAAAGTAAAGCCGCAAACTACCAGACAAGGTCCATTGAGGAAGCGTAGTTCGTCCGTCAATCCAGCTGTCGCCGCATCAACGTTATCTGTCGACCAAGTCAAGGAATCCCCCTCGTTATCAACAATTCCTCTTCCTCCCTTTACGTTTGAAGGAATATATACAGGTAGCTTTTACGATGCTTGTATTGAAGAGCTGACCACTGTAATAGAGAGTTTAGATAACAAGTCTTCCCATCTGATGGGCAATTACCTTTACCTCAGAGGAATGCTAAAGGTTGCCCGTGGCAACAAAATAGATGGTCTTGGTGATTTATTTTCTCTTTCCACGAGAAATATGCAGCTTTTCCCGAAAGATTTCATTGGTCAACTACTTTCCAAACTCATCGAAAGAGAACAGGCTGAGTTGCGCCAAAGAAGTTTCTTCACAGAGGCGAACAGAATACAGAACCTGAGAAAAACGACAGATTCTTTGAGTGGAGGCAGAGCGAGGGTAATGACGTCAGCCGTGCCTCTTATCCCTTTAGACCAAACTGAATTTGTGAAGCGTGTTACGATGCTGCAAATCACCAACAGCACAGGCACAGCAAAGAAGCTCTTCGACGTTCTCAAGAACAGAATGAATGGACTCGTTGATCCTGATGTCTTCAGTAACTTCTACAGATCTCTTCAAGAGACTGACCGCATTGCTCAATCGATAGAACAATCGATAAAGCTGACTGGAATCACCTTAGAGCCTGGCGAGTCCGTTGTCCTGGTATCCACGTGGTTACGTACATCGACGGCTACCGGAAGAGTAATTGCCACGACTAGCAGGTTATTGTTTATGAAAGAAGGGACACACGTGTGTGAGTCAGTCATGCGCTTTGAGGACATCCAAGACGTTGAGTATTATCAGTACTATGTGGTGATACCACCTGGTGTTGCTGCTCTCAAAATTACAAGCAGAATAAAGTCTGCTGTCGCGTTTATTGTGTGTCTAAAGGATGACAGAACGTTCTGGTATGAGTGTATAAAAGAAATGGGTGCTGGATATAGGTTAGCGGAAGAATTCAAAGACCATCAAAGTATTAAACAGGCTTCACAAAACGTCATCATAGCTGATGCTTTACGTGAAAGTGAACAAGTGGATTATATTGGAAATATCCTTTATCTGAAAAACATTGAAGAGACTGAAATTGAAGCGAACAAACCCTCAGATGAAACTAAAAAGATGTTAATACGAAGAATCGATCCAACACCACAAGCAAATGAGACAGAGAAAACGACAATCGAAGCCATGGTTTTTGCGCCAGAAAGTAAAGAATACGGTAACGAGGCAGAAGTTTGGTGCGGTTTGGCATCTGGTGCTGTGGTGGTTATTGATACGATATCTTGGAACATTGTTGCTGTTTTACGATACACACATAGTAGAGTGAGTTGCCTGGAATCCGTGGGCAAAAACCATATTTGGGTTGGGTCAATGGACACTATTATATATATTATTAACAGGAAAACCAAGCAAGCTGACCAACAGCTACACAATCATCATGATTTCATCTCCCATATTATCAAGACCGAGGAGGATGATGGAACTCTGACAGTCTGGAGTGCAAGTCTTGAGGGACTAATCATTGGGTGGGATCCAGTGACTTTGACTACCAAGAAAACGATCAAGATGGATGGCGCAATGACGTCAATCATTGCTATTGGCAACGCGTTCTGGTGTGTAACAAGAAATGCAGTACTAGTTGTTGCTAGGGATTCTGATGGCAGTAAATACGAAAGTTTAGCAAGTACCACCCCAGACAATGTACCTCGTTCTATAGACTGTATGTGCGCCATTAATAGTGATAATAAGGTGAAACAGGTTTGGACAGGATGTGATAAAAGGGACATTATTGCAGTATGGGATACGACTACCTATAAACACAATGTTCACACCATTATTTGTAAAGACCCCAATGTTAAGTGTAAAGGTTTTACTCAGATGCTGTACGTAGATGGCAAGGTATGGGGTGGTGGTAGAGATGGTACTATTTATATCATCAATGCTCTAAACGTACAGATCGAACAGACTCTTGAGCTTCACAAAGACAGGATCAGATCAATGTGTCTCACTGACACCTCATTTATCTTGACGGGGCCTGGGTCGATCGATGGACGTCTTGCTGTCTGGCGGACTCATCTGCTGACCATCGCTGATAGTGAGGATGGTTTTGAGGTCGTTGAGAAAGGCATTGTTAAGGCAGAGAGTACGAAGAATAGCAGGAGAAAGAAATAGTGCTTTCCAATTCTTGCTCTAATTTCAGTTAGGGCTTTTAAAGGTGACGTCATTCGAAAGAAAAATCAACTTCCGGGTCCAAAATAAAAAGCAATAAGATTGAAAAAAAAAAATTTTTCACTTTTTTCTTTATAGCTATATTTGTTGCTCAAAATTCCCACTTTTTAAGGTGGAAGATTGTGCGTCTAATTGGACCCGGAAATGCGTCACAACTTAAAAGCTCTAGGCTGGCTTCAATTAATTATATTCATTTTAAATGTATTTTAATTATATAATTATAATTTTATAATTCAGTATAATTTTAATTGACAAAGTAAGAACGCCGTTACAGCGTTAAGCCTGTAACACTACAGCATACAGCTTTTTAAAATAGGACATATTTTTCTTTTTTTATATATTTCAATATTTTAATTATTACAGCAAGGATTCCTGACAATAGATAACTAGGTAGATTTAATTATAATAATTAAAAACTGCATTTTTATATATTTTTTTCTCGATATAAATTATGTTTTACGTCATCGTGATGTATATACCACAGGTAGCCCAAGCTCACTGTTTTATCTGCTTTCTCCTCGCCACTCATATGAGTGTAAGTCTTATTAGATTTGATTAAGATTCAACGATTCTATTCCAGGTTTCGTTTAGTCACATATATCTCTAGTAAATAGCCACAAACAGTGAGCTTGGGCTACCTTTGGATATACTATACAGTAGAACCCCGCTATCTCGAGCATCCAAGGGGAGCCAAAAACTATTCGAGATAGCGGGGTTCGAAATAACCAATACAGTAGTTAAAGACTGGATCGAAGGGAAATGATCACGAGTTGGTGTTCGAGATAGCGGGGTTCGAAATAACTAATACAGTAGTTAAAGACTGGATCGAAGGGAAATGATGATGAGTTGGTGTTCGAGATAGCGGGGTTCGAAATAACCAATACAGTAGTTAAAGACTGGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RUS2	DENN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=DENND3 PE=1 SV=2
A2RT67	DENN domain-containing protein 3 OS=Mus musculus OX=10090 GN=Dennd3 PE=1 SV=2
Q6NTN5	Myotubularin-related protein 13 OS=Xenopus laevis OX=8355 GN=sbf2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002251 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03455 all species →	dDENN	dDENN domain	Domain	Interproscan
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20162	DENND3; DENN domain-containing protein 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.