Gene detail

Detailed information of gene03373.t1 in Actinoscyphia liui

Genomic Location: chr1:52238897...52254837
NR annotation: XP_020916005.1, COP9 signalosome complex subunit 2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene03373.t1

CGCACGGCCTGGGTACTTCGTTTTGGTCGTACATTTCTCACATTTTCTGTTGGTATTTTGGAGGAGAAATTAGAACTTTTAGGACATTTTCCAGCAATGTCCGACGTGGATGATGATTATATGTGCGATGATGAGGAAGACTATGATCTGGAATACTCAGAGGACAGTACATCAGAACCTGATGTGGATCTAGAAAATCAATACTATAATTCTAAAGCTCTCAAAGAGGATGACCCTAGAGCTGCTTTACAAAACTTTCAAAAGGTTCTTGATCTTGAACAAGAAAAAGGAGAGTGGGGATTCAAGGCTCTTAAGCAGATGATAAAAATCAACTTTAAACGAGGAAAAGTTGAAGAGATGATGACACATTATAAACAACTTCTGACATATATAAAGAGTGCAGTTACAAGAAATCATTCAGAAAAGTCCATAAACTCTATTCTGGATTATATTTCTACATCAAAGCAGATGGAGCTGCTTCAGAATTTTTATGAAACTACACTTGATGCTCTAAGGGATGCTAAAAACGACAGACTGTGGTTTAAAACCAACACTAAGCTTGGTAAGCTATATTATGACAGATTAGAGTTCACCAAACTTGCAAAGATTCTTAAACAACTACATCAGTCATGTCAGACAGATGATGGTGAAGATGATTTGAAAAAAGGAACACAGCTTCTTGAAATTTATGCTTTAGAAATTCAGATGTACACATCACAGAAAAATAACAAAAAATTAAAAGCATTGTATGAACAGTCACTACATATCAAGTCTGCAATTCCTCATCCTCTTATTATGGGTGTTATACGAGAATGTGGTGGTAAAATGCACCTTAGAGAAGGAGATTACGAGAAAGCACACACTGATTTCTTTGAGGCATTTAAGAATTACGATGAGTCTGGCAGTCCTAGACGAACAACATGTCTAAAATACTTAGTTTTAGCAAACATGCTGATGAAATCAGGAATTAACCCATTTGATTCACAAGAGGCCAAGCCATACAAGAATGATCCAGAAATCTTGGCCATGACCAACCTTGTTAGTGCATATCAAAATGACGACATCAATGAATTTGAAAAAATCCTAAAAACAAACAGGAAAAACATAATGGACGATCAATTTATCCGAGAACACATTGAAGATCTTTTACGAAATATCCGAACACAAGTACTCATAAAGCTGATTAAGCCATACACAAGAATCCATATCCCTTTTATTTCGAAGGAACTTAACATCGATAAAGATGAGGTGGAAAGTCTCTTAGTTTCTTGTATTCTCGATAATACAATTCACGGAAGAATTGATCAAGTAAACCAGCTGTTAGAATTGGACAGAAGATCGCAAAGTGCTGACAGATTTACGGGTTTGGACAGATGGACCACGCAACTAAACTCTCTGCACACAGCTGTTATTAATAAGATTGCCTAGACGTGATGACCAGACACATTGCATTCAAAATGCTGAATAGAGCGATGGTCAGGATAGATTCGCAGGGAAATGCACATTCTGTTGACAGAAGAAAATGGACTCTTAACAAACTTTATATTCTTTCCCCCTAGCACCCTAAGAACTGATTTCTCATTTCCATCTTTCTCCCATGATTCCCCTCTTTCCTTGTTGACCATTTCTTAGCGTCAACTTGTTTTCAATTGCAGTACATATATTTTTGTGAATTCAAAGAGGAGAGCCTAAGAACTGATTTCTTATTTACATCCTCCCTTGACTCCCATCATTCGTATTTCTTAGCGTCAACTTCTTTTCAATTGCAGTACATATATTTTTGTGAATTCAAAGAGGAGAGACTCATTTCCATCTTTCTCCCATGATTCCCTTCGATCCTTGTTGATCATTTCTTAGTGTCAGCTATATTTTACTCCAGTTTAAATTCGCGGTATCACCACCGCGCCATGGTAATTGGACTCAGCAGTCAGCACAGTTCAATAATTCTCCACATATCACTGAAGATAGAGTGATGTGTGTGTTATAACTCAGAGCTTGGAGTCCTAGCCTCCCTTGAAGGCCTATGTGAACCTGGGTCAGCCCAGGACTCGTCTTTGAGTAGTCTCGGTTACCCAGACCCAGGTCGAAGACGAGACCCAGAGACAGAAGTATCTGTCGTACGATTTCCATATATGGGTGTACGTATACACGGCTCTGATGTACATACACCTATTTCAAAAAAGGTTGTCGGCCAAAAGGCCTCAAGCCTACATGACCAGCCCGAAAGGGTGTATGGGTAGAATCAATAAAACCATAAAACCACATGAATAATCAAAACGACAATTGACTATCCAGTTGTTCCTTGACCTTAATTATACACCTAAGATGTGCACTTGCAATAGTAAAACCCTCACCAAAACCGTAAAGCGAGTGAATTATTACCTCTACCCTTACTCCCTTTCGGTCTAGTCGAGTAGGCTTGTTGGCTACTCGCCGACAACCTTTTTTGAAATAGGTGTATACAGGGCTCTCATGTACACAGAAGGCTGAAAAGAACTTAGATAAGTTTCAAAGACTCAAATCACCTTCAATTAGAAATTACAAAGAACTTCGGTGAAGAGCGTAAAGATTCGATCCCAGCATTATTGATTGCCTAACCCTACCATTTACCCTAAAGCTAACCATTAAGCCATGAAGCCAATTCGCTTGAGTGAACCGGAACTTTTGTGTTATTTATATATTTTAAAATAACCACGTATATGTACATATGATTGCATGCATAATTTATAACCCTCTATGTGTACATGAGAGCCTTCTATATGTACATCCATATATGGATATCGTACGACAACCTCTACTGCCCAGAGAAGGGTCTGGGAGAATTGTTAATGAAGTTTTGTAATATTCAAAATGGCGTCTGACCTGATTTGGGTCAGAATGTAATTGGTCAATTTTACTCATAGGCTAGGTCACGTGTTGCGAAGTTGACCAATCACATTCTGACCGATTCTGACCCAAATCAGGTCAGACGCCATTTTGAATATTACAAAACTTTATTAACAATTCTCCCAGACCCTTCTCTGGGTCTCGTCTTTGATCGAGAGGGGTCTGGGTAACCGATCTTTGAGTGACCGCATTGTACGAAGGTTGGATGTAGTATGGTTTTGTTAAATTAAAGTTGAATACAATTTATGTGCCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IR75	COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis OX=8355 GN=csn2 PE=2 SV=1
P61201	COP9 signalosome complex subunit 2 OS=Homo sapiens OX=9606 GN=COPS2 PE=1 SV=1
P61202	COP9 signalosome complex subunit 2 OS=Mus musculus OX=10090 GN=Cops2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006683 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR050871 all species →	Family	26S Proteasome and COP9 Signalosome Components	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10678 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000338 all species →	Biological Process	protein deneddylation	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12176	COPS2, CSN2, TRIP15; COP9 signalosome complex subunit 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.