Gene detail

Detailed information of gene03456.t2 in Actinoscyphia liui

Genomic Location: chr1:53930402...53938593
NR annotation: KXJ28737.1, putative histone-lysine N-methyltransferase PRDM6 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene03456.t2

ATGAAAGCATCGGATATTAAAACAAGATTATTTAAACAATCGGATATTCAGATAACATTGCTGATAAAGGATAAAATTCAGACGGATTTGCAAAATGTTTCACCAAAGCTTCTCCTGCAAAAAACAAGTAGTGCGAACTACAACTTTAGCGTAGCAGAAATACTGGCCTATCTATTCAGCCGCTCTGAACTCAAAAGCGTTAACACTGGCGAACAATCTACAATTTCAAAAAATACTATCGAGAATTGCAAATCATGTGACGATCTACCGAATGGCATAATGTGCACCAAACACAAACACCTAGAAACTCTTAGAATACTACGCAGCCCTGACAAGAAAGAGAAACAACACTCAAGGGCCATTGCATCCTTTCCACCAGAAGTTGAGCTTTGCATGTCTAGCGTACCGGGAAAGGGATACGGTGTACGAACTGTACGAGTCATTCCCGAGGGAACTTGGATTGGCCCGTACGAAGGCAAACAAGTCAAGCCTGAAGAACTGAGTCCGGAGACAGATACCTCGTACATGTGGGAGATATTCCAAGATGGAAAACTGACTTACTTTCTGGATGGTAGTGACGATAATCACTCCAGTTGGATGCGTTACATCCGGTGCGCCCGTTACAAGGCAGAGCAGAACACTTCCGTCATGCAATACTTCGGGAATATTTACTATCGAGTCTTCAAAGACATTCCACCAGGTCAGGAGATTCTCGTCTGGTACGATGACACGTGTCCACACTACTTGGGAATTCCACTCAAGATGCAGGACATTGGGAGCACTACGACGTTACGTGAAAGCGCAGTAACCAAGCCTCAGACTGCTCCAGTCCCCACCCGAGTACCTATCAACTCACTCAACACAGGAATCCCAAAGTTACCAAGTGTTACTCATCGTCCCATCATGACATCATTTGTACCTTATCGCGGCTACACACACCATTCACTTCCACCGGTAGTCAGAGCGCCACCACCGTTGCCTAGATACCAAGTGGCTTACCCGTTGGTATCACGTGACACGCTATTACACAGTTCATTCGCAAACTCTTCAAATTATAATTTACGAGAATTAAACGACGCCTACACGGCAGCAGCCATATATGGTAATGGCTCTTCTTATCATGCAGGCCGCAAAACCAAGTCACCAAGCGCTGTAATTACTCATAATAATATCCACAATTTGCTCGTCTCTCATGACGTACTACCCTACTCACGTGATCCGCCAATGATCCAATCAAAGGCAAATGGGATTTTAGACCAATCAAATACGAGTCCAGAATTGTCTCCGAACCAATCAAAATCAAATGCAGGATCACGTGATGTACCGAATACCGGTTCTGATCCGTTGAAAGGAAATTTGGATGCAAATGGAAACATCCAAAACAAAACTACGGGCAACCAAGAAACTTTCTCCGAAAAAATCAAAGAGAAACAGTTAGGATTGACATCATCCGACTCAACGATCAACAAATTCCTTTCCCAGATCGAAGAAGCGAGAATCGAAGAGATGAAAGAAAAGCAGAAAAGCTTGAAAGAGATAATGAATGAAACGAATGTAAATCAGGATCCGGAAGACCCCTTGGAGCTCAGCATATGGAAGTGTGGCCAATGTGCAAAGTCCTTCGCTCAGCAGCAAATCCTCCAGCTTCACATCTGCCCGTGCATACCCGAGAAACCTTATAAATGCACATACTGCCGCGAGGCCTTTGCACAACCAAGCGACCTGCGCACGCATGCTGTCATTCACAGCGGAAAAAAGCCATTCAAGTGCGGTTTTTGCTCCAGGCTGTTCGCGGGCTCAACCACCCTCAACAATCACATTCGAACCCACACTGGAGAGAAACCATTTGGTTGTGAAAAGTGCGGGAAAGATTTCTCCCAAGCCTCCCATCTAAGCAGACATAGACGAACCTTGTTCGAATGCAAGTAGGTATGACGAATGACGTAGTGTTACTATGGGTACAAGTAACCAAGGAAACGATATGGAGTCTGTCCGGTCAGTAACCATAGAGACAGAGAGTAAATGGAAGCAAGTGACTATGAAGAATGAATTTGAGAAACGGAATTTAGAAACAACGATCAAGAAGAAAATAAATATAAACTAATCATTGCATGAATGTTAAAAATGGCATTTGTTATCTTATTCGTACTAATTTTTGCGGGCTTTAATTTGTCGCGAAAATGATGGAGGTGAATTCGCGATTTAGCAGACATATCGTGCTGATAGGAGCTAAATTGGCCGATTCGATGTTGATCTTTTTTTCGCGGGACTCAGTTTAATTTTGCGACTTTTTAAAAATCGCGAAAAATAAGTCCCGCGAAAATTAGTACGAATAAGGTAGATATCGTTTGTATAAAATAGACCCTTTGTACTAATGTCTGGTCTGGCGAACAAAACAGTAGGGCATGGGTTCTCACCACTCAGTGTAATCCAGGTTCAAGTCCCGCCCGCACCGCGTCATATCATGCTGTGCGACTGCTGAAACCAGGGCCACTTCGACAAAAAAAAAATCAAAAGTCAGAACGAAAACATTTTAATTTGACTGGATCCAAGTTCAAATGTTATTGTTTTCTGCTGGCTCTTGATTTTCTGAAGTACTCAAAGTTGGAACGTTGTGTTTTTGTCCAGAATTCTGATTGATTGGTTTCAGTAGTCACACAGTAATTACGTTTGTTTTGATGTGTTGTTCTCTGCTTTGCCTCGAGCATTTTTTTCACCGTTTTCTTTCTCCCACATGAGATATAGAAAAATCAACATGTGAGTCGAGTATTGCGTGCGTAAAATGCTGAATGTAGAGGTAGAGAGTGTGAGAGAATAGCCTGTGAAAAATGTCTTCCTATTGCGCTGGGGGGAGGAGCGCTATTGTTTCGTCCTTCAGACTGGGAATTACTACAAGGGGTTTGTAATAATTTGACAGGAAACAATTTGATAGAAGTATAGTACTGGGAGTCAGGAAGTTTGCTAAGCAGGTATGGTAATATTGAAGGTGTCAAGACATGATAGTTAGGGTATAATGCATGACGGGAAGGTATTTTCCCTTCAATACTTGATACTACGTCTTAGAAACTAGATTTGAGATCAGTTTGTAGGAGGGTGAAATTGTAATATAATGCTAAATTACAATAAGTTTTCGAGAAAAGGTTTTTTATCACATTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H4Q4	PR domain zinc finger protein 12 OS=Homo sapiens OX=9606 GN=PRDM12 PE=1 SV=2
A2AJ77	PR domain zinc finger protein 12 OS=Mus musculus OX=10090 GN=Prdm12 PE=2 SV=1
Q9GZV8	PR domain zinc finger protein 14 OS=Homo sapiens OX=9606 GN=PRDM14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000194 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR050331 all species →	Family	Zinc finger	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16515 all species →	PR DOMAIN ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0034972 all species →	Biological Process	obsolete histone H3-R26 methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20795	PRDM6; [histone H4]-lysine20 N-methyltransferase PRDM6	EC:2.1.1.361	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.