Gene detail

Detailed information of gene03461.t2 in Actinoscyphia liui

Genomic Location: chr1:54021127...54057774
NR annotation: AAK27303.1, peptidylglycine alpha-hydroxylating monooxygenase [Calliactis parasitica]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene03461.t2

ATCACTGGAATTCTACAAGGGGAAATATAATTTTGGTCACTGATCTCCAGTCGCTGTAAGCCTCAGCCTTTTTATTTGAAATGGCCTGCGAAAGATCACGGATTTTACTCTTTCTAATCGTTTGTTGTGTTGGAGCATCGACAAGGTCGCTGGAAGATTATGGTTTCGCTAACAACGATTATGAATCCCTCTACCAACGATCAGACACAAAGCAACAGGACGAACCGAAAGCGATCAACATCGCCATGCCAGATATTCACCCTACAAAACATGATTCATATTTTTGTACGTCAGCAGAAATTAAAGACCCTAATACATATATTGTTGGCTATGAACCCCATGCCGAAATGCATACAGCACATCATATGTTACTCTTTGGATGTCAGTACCCAGCATCCAAAGACAGGTTTTGGAATTGCGGTGATATGGGTGTAGGTGTTTGTGGAAGGGGTTCGGGAGAGAAGATCTTGTATGCTTGGGGAAGAAATGCACCAGTTTTAAAACTTCCGAAAGATGTTGCTTTCCAAGTTGGAGACAAAGATTCTAAATATCTAGTCCTACAAGTACATTATGGTCACGTTGATAAATTTAAAGCAAACCCTAATCTTAAGGATGAGTCTGGAGTTACACTCAGAGTCACCAACCAAAGACCTCGTCATTGGGCTCGAATTCTAGTGCTAGCAGCATCATCTATCTCTTCAATCCCAGCACAGAAAAAAGCTTTTAATCTGAATTTGGGCTGCAAGTACAGCAACCCAGCTGTCATCCATCCTTTTGCATTCCGAGTTCATGCTCATGCACGTGGTGCTGTGATTACTGGCTACAGGATTCGTAATGGCCAGTGGACATTGATTGGTAAAGGGGACCCTCAAAGACCACAGGCATTTTACCCTATTAATAAGGACATTGAGATTAAGAATGGTGATTTATTGGCTGGTCGGTGTACGTACAACACCATGAAGGAAAACAGGACAACATATATAGGAGCAACAATGAAAGATGAAATGTGCAATTTCTACATGATGTACTACTATGACCCTGCAACTACCTCAAGTTCTCCTGACGAAACCTGTTCCTGGGCATCTATAAACCCATCTGACTATCCAGCTGATTCAACAGTTCTTCTGCCTGGCAGTGGAGTAAAAATGGAAATGAAACGAGATGAAGGCACAGAAAGCTTAGAAGAGCAAATGGCAATGGACTAAAGCGCGCATGTGCAGATCAATCAGAATTTAGGAGTAAACCATGACAACCAACAAAGATTTCGATAAAGAGTGGAAAGATTTTATCGTTAATTCAGATGAATTTGCGAAAACGAACTTAAAAATTGAATATAAAATCTTAATAATATTTTTAAAATGGAAATAAGAACTACATCATTTCGTAAATGTTCATACAGATATTTTAAGTTTCAGTGCATAGAATTTGCTAATATTATATGGTTGTATATTTAACGTAATTTGCTAATTGTTGTATTTGCACTCTAGAATATTATTGTTTATTATTTCTTTCTTTGCACTAATTGTAACTGTAAGGGAGTGTAATTAAAGTTATGGTCGTAATTAACACTTTTTTGGTCTCATTACTTAGCATTCTTCCATAATCAACACACAAATTGGAAAATTATTTCAAATTTCGTCTCCTCTTTCACTTCTACTTTGGCTTCATTTCCTAAGTTTTCTTCAGTTTCCCTTTCACATTGAGTTACAAATGCCTCTTAATTAAGTTTCCATATAATCGCAAAGATCACACGATCGATTGTTGCAATCCTTGCGATCGTTGGTTTTCATAAAAAATTCTCAATCGCAAGGATCGCAACTATCCCAAAGATCGCAGCGATAGCAGAATTTTGTGGTTTTCAACGATCACAAGGGTTGTAGAACATTTTTTCTGCGATCGTTACGATTATATGGAAACCAGGTCCGTATGTTATGGACCAAGATTTTCACTAACATGTGGCCCAAGCGCGACGCACCCGGACAAAGAAGTGAAAAAACCAAGATTTAGGGACCGTTATTAACATTAGGGGGGGGGGGGGGGGGGCGGCTGGTACGAAATAGGGAGGGGGGGCAACGAAATAGGGAGGGGGGGCATCATACTTTTTCAGCGAGGATTTATGGGGGGATGCAGCTAATTTTACGAGATCAAGAGAGGGGGATGAAAGTTTTTGTGACTACTCCTCTTCTTAGAAGAAAGTAGCCTCTAGCAAGTCCATCAGTAAGTAGAGTGTCCTACTCTTCGGATAGTGTTCGGAGCCAATCAGCACTCAGAAAAAGTAATTCGGCCAGCATTCGGTAGTGCTTCGGTACGACGATGAACTCCGAGGCGTTCTCCGAGGCTAGATTTGCAAAATTGGTCAAAATTATATGGCAGCTCATGGCAGCTCGCTTCGTCCATTATAAGGATTGAATTAATAGATTCACTAAAAAACCCGCTCCAAGTCAGTTGGATGGAAGATTCTCCATGGGTTTTATTCATATAAGTTAATACATCGACATTTGCTAACCTTCTGCCGCCGAATTAAACGAACCAGCTGAACTGACAGCAAACTGTTGACAAATTCCCATTTAGTAATAGAAGTTCAAATCAAGGTAACTGAATACTAGTCTTCTTAATGAAAATTATATGAAATTTTTTTATTGTAAACACATGTTTTGTAATGTAAACAGTTATAAAAAAGTCTTTAGTTTTTACTCTGGGAAGTACAAAAGGGTGGCCCCTTGGCCTTAGCAATCTCTCCCTTTTCGGTGGTAATAGGTCGTGAAGTGGATTTCCTTCTCGGATAACTTTAGACCAGAGAGCTTTATCGCTTTTCTCAAGCATCTCTCTAATAGGAATAATGGATTTGATGTATCCAAATCTTTTATCTCTTGATTGCAGACGATCTATATTAGATAAATACTTGCTATAGGAAGCCACTCCCCATACTTGAATTGCATACGAAAACAAAGACATTATGAGGCAATAAAAGAGAGTGTGTAAATCGCCCAAGTTGTACCCATGACTTTTACATGTTCTTAAAATATACATTCTGCTGTTTGCCTTATGCATAAGGTGTAGTAAACTGGGCATCCCAATTATTAATATTGTCACTAAAGTCACTCCTAAAAGCTTCAACTCAGTTTCCTGAGAAATATCACAAACTGGAATTAGCCTGGGCTTATTTATATTTCGCTTTAGAACTAACTCTTTTGTCTTGTCAAGATTGAGACTCATACCATTACGTGAAGACCTCTCTTTGATGTTATTAACCTCGTCTACCGCGTGGTCTTCACCACCTCGCACCGGAACACTAACGGTGATGTCATCTGCAAACTTGACAAGCATGCTCTTATCCGAAGACTTGCTGATATCATTTACCATTACTGACAACAAAATGGGTCCTAAAACAGTTCCCTAGGGAACACCCCTATTTATTTGTACAAAATCAGCTTTCTTTGTAGTTAGACATACTCTTTGCATTCTCTCCCCTAAAAAATCCATTATCCAGTTGACAATATAAGGGTTTATGCCCGTTGACTTACGCTTATCACACACAATCCTATGAGAAACCGTATTGAAAGCCTTGGAAAAGTCAAAAGACAAGACCCTTACAAAGTCAAAATCACCATCTAAAAATTTCATCCAAAAATGTTGGTTACGTATTAAGGCCATGTTGGAATTGCAACCCTCCCTATATGTTGAAATCTCCTCGCTTTTAATACTCCAAATCAAGGCTTATTTTTAGGGACCCACTTTTTTTAAATATATAAATGAAAATAAGAGAAAAAAAGCTAAATTCTAGATTCATATATATACTTTGGGTTCCAGAAATAAGGTAGTATTTCGTATACTAATTTTATGTACAAACTACTGTAAATGTTTTTGTGATTTTTTCCCAACCATAGTTTACCTTTGATGTTTAGTAATTAAGCCATTACGCTGAATATGGCCGATTGGAAAGGCAGCGGTGAACAGCTTTATTCCCTTTGAAAGAAGCATAGCTCACGAAGAAGTGCTGGGGGGGGGGGGGGGGGGGGGGGGGTGCTGTTTTTTTGTGATAGGCAAGAGGGGGGATATATCTTTTTTCATTTGATTTGGAGGGGGGTTGCATAATTTTACTCAATTGATTTTACTTAAACTTCCCCGTTTCATACCAGCCCCCTCCAATGTTAATAATGAACGGTCCCTTAGATGTACGGGGTTAACAAGATATTTATTATATGGCATTTTGCATCATTTTTCAGTCCGTACAGCAAGATACGACTGCAAATTGACCAATCACAGTTTGCACAATTACCTTGCCATATAATAAACATGGTTATTTTCACGACTCGTAGAAATGAAAGTGCGTTATACACGGGTTGCTTTTATTTCATACAGATAAAGTGTCACACAATCAAAAGCGTCACGCAATCAAAAGCGTCACGCAATACATCCGTATCACGCTTATAACAGTTTATAACCTTTGGTTTCAATTAGTTGATTGCCCTGAACCTTTCTGTAACACCAAAAGATCCAAACCTTTTCTCAAAGAGAAGCAAAATTGGCCACAAGGTGGGAGACGCACCGGCGAGCTGCCATTCGAAGCTGGGCAGGTCAGCGGCGTGTCCTTGGATACGAATGGTAATGTGGTCATTTTCCATCGCTCGTCCAGAACCTGGGAATATGACACGTTTGACGACAACAATGTTCTCAAACACAAAACACCAATTCCAGAGAATACTGTCACGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12890	Peptidyl-glycine alpha-amidating monooxygenase B OS=Xenopus laevis OX=8355 GN=pam-b PE=2 SV=1
P08478	Peptidyl-glycine alpha-amidating monooxygenase A OS=Xenopus laevis OX=8355 GN=pam-a PE=1 SV=3
P19021	Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens OX=9606 GN=PAM PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001143 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03712 all species →	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan
PF01082 all species →	Cu2_monooxygen	Copper type II ascorbate-dependent monooxygenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008977 all species →	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR036939 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan
IPR000720 all species →	Family	Peptidylglycine alpha-hydroxylating monooxygenase/peptidyl-hydroxyglycine alpha-amidating lyase	Interproscan
IPR020611 all species →	Conserved_site	Copper type II, ascorbate-dependent monooxygenase, histidine-cluster-1 conserved site	Interproscan
IPR024548 all species →	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR014784 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR000323 all species →	Domain	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680 all species →	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016715 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0006518 all species →	Biological Process	peptide metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00504	PHM; peptidylglycine monooxygenase	EC:1.14.17.3	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.