Detailed information of gene03545.t1 in Actinoscyphia liui

Genomic Location: chr1:55769011...55791664
NR annotation: XP_031559699.1, uncharacterized protein LOC116295881 isoform X1 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P55664Putative threonine dehydratase OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a01490 PE=3 SV=1
Q99U50L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=tdcB PE=3 SV=1
Q7A5L8L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain N315) OX=158879 GN=tdcB PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003566 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00291
all species →		PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036052
all species →		Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR050147
all species →		FamilySerine/Threonine DehydrataseInterproscan
IPR001926
all species →		DomainTryptophan synthase beta chain-like, PALP domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48078
all species →		THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003941
all species →		Molecular FunctionL-serine ammonia-lyase activityInterproscan
GO:0004794
all species →		Molecular Functionthreonine deaminase activityInterproscan
GO:0006565
all species →		Biological ProcessL-serine catabolic processInterproscan
GO:0006567
all species →		Biological Processthreonine catabolic processInterproscan
GO:0009097
all species →		Biological Processisoleucine biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01754E4.3.1.19, ilvA, tdcB; threonine dehydrataseEC:4.3.1.19
Valine, leucine and isoleucine biosynthesisko00290deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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