Gene detail

Detailed information of gene03571.t1 in Actinoscyphia liui

Genomic Location: chr1:56383114...56392354
NR annotation: XP_020898245.1, zinc finger RNA-binding protein isoform X2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene03571.t1

ATGGCGGCGAGTAATTATTACGCTGGCTATACTTCAGGAGCTCAACACTCGCAGGGATTTACACAAGTTCAAAATCCGCCGATTCAGACGAGTTACACAGCACCTCAAGCAACAACTGGTTATGCTGTTCAAGGTACAGCACCTACGGCTGCCCATTACGGGCCGCCTCAAACTCAAGCTCCGAGGCAAGTAGTTCAACAAGCTGCCTTCTCGGCAGCTACTAGCGCTTATGCTCAGACGGCTCCCACACAAGGAAGTGCTTATGGCTACACAGCAAGACAACAAGATGCTCCTCCACCACCACCTCCAACTAATACAGCTTACCAAGCAGCAGCTACTCATGCCGCCTATCAGTCCCATCCAGCGTCCGCCCAAAGTTACTACGAAAGGGACGCTTACGAGAACAAAGCGACCTACTACGCTCAACAACCGGCTTCTACCGTTCAAGTTAGCCAGGGAGCGTATTACGCCCAGGGCGCAACAGCAACGGCTAAGGCAGCTTACCCAGCATCTGTAGCTACAGCTTATCCAACGCCTGTCAGTGCCACACGTGTCGCAGCGAAATCTCATCCCGTACAAGCTTACACGTCGAGTTCTACTGTGGCCTACCCGTACTCGACAACCCGTACACATACCAACTACAACAACCAAGGCTCCTACTCCACTTCAAACTACGGCAGCTCAAATACTGTAGCTACTGAAAGCTACCATCCACAGGCCTACGAAGCCGCTGTGTACAATGCTGCCGCTGCGTACGTTCAACAACAACAGCACCAACAAACACCCTCGAGGCCGAACTGGAAGAATAAAGGGAGCGGAATGGCGGGAATGCCGGCTAACAAGCAACAGAAGCCTAAAGCTCCTCCTAAACAGCCACAGATTCACTACTGTGATATTTGTAAGATTAGCTGTGCAGGTCCTCAGACTTACAAGGAGCATTTGGAAGGACAGAAGCACAAAAAGAAGGAAGCTGCTGGTAAATCTAAGCCTGACACTTCAACAAACAACAGCAACTGTTACCAATGTGAACTGTGTAACGTGACATGTACTGGTGCTGATGCCTATGCTGCACATTTGAAGGGTTCTAAGCACCAGAAGGTTGTAAACCTACATGTTAAAATGGGTAGACCCATCCCAGAGATTCAACCAATCAAACCCCAAGAGCCCAAAGACAATGACGACAAAGCAAAATCTGCTGCAAATAACAGAAATCAGAACAGGAAAGGAGGAGCGAAGAGAGCCACAGCCCCTAAGATCACATTTGTTGGAGGAACAAAGTTGACAACCACTGGAATAGTTAAGAGTGATGCTGCTACTGATGGCACAGCTGTACAGATCCAGCCACAAGCTAGTAAGGAAGATGATAGTATGGAAGCAATTACAGAAGAAGAGAGATTTGATCTGGCTACATTTACTGGAGTGGATAAAACCAAGATAGTTGGCTCAGACTATTTAGAAGAAGTTAAGAGTGATGATGGCAAAGTAACAAGCTTTCACTGCAAGCTCTGTGAATGCAAGTTTAATGACCCCAATGCAAAGGAAGCTCATTTAGCTGGTCGTCGACACAGGCTTCAATATAAAAAAAAAGTTCAACCAGATCTCATTGTTGAGACCAAGCCAAGCAACAGACGGTTGAGTAAATCCCAGGAAGATAAACTTCGCCACAGATGGGAACAAGAACAGGTGTGGAGGTGGCGCAGAGATGAGGATGTCAGATGGCATGAAGAGGAAGCAAGAAGATGGGAAGAAGATGAATTTATAAGACGCATGGAAGAAGAGAGGGTATGGGAGGAAGAACACAGGCGCAGATATGAGGGAGATTTTCTTGAGTGGAGTGCCACATCTGGCGCACACCCAGGCTCAAGTGCTGTTCCTCCAAGACTTATGGATGCTCCCCCTGGCATGCCCCACATCCGTCCAAGATACAACTCTCCAGATGATCAAATGGTCATGGCAAAACACTCAGCCATTTATCCAACAGAGGCTGAACTTCAGGCAGTCCAAAACATAGTTTCAGCATCAGAAAAGGCACTCAAGTTTGTGTCAGATGTTATCTCAGAGGAAGACCATCCACAGATGGAAGTGGATGCTACAACTGAGGCAGAAAAGGAAGAAACACCTGTAAAGAAAGAACCTGAGCCAGAAGTTAAGCCTGAGCAAGCTGAGGTGTCGGCTGAAAAGACAGATGCCGAGGCTGAAGCTGAACCCAAAGAACCAGCCAAACCACAGGCACCTAGAGCCTTAAAGGGTGTCATGCGTGTTGGAGTTCTAGCTAAAGGACTTCTGTTAAGAGGGCGATTAGATGTGAATCTGGTAGTGCTATGCCACAGTGCTTGTCCTTGA

Transcript

gene03571.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCR6	Zinc finger RNA-binding protein OS=Danio rerio OX=7955 GN=zfr PE=2 SV=2
Q96KR1	Zinc finger RNA-binding protein OS=Homo sapiens OX=9606 GN=ZFR PE=1 SV=2
Q5REX3	Zinc finger RNA-binding protein OS=Pongo abelii OX=9601 GN=ZFR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003064 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF07528 all species →	DZF_N	DZF N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR049401 all species →	Domain	DZF domain, N-terminal	Interproscan
IPR006561 all species →	Domain	DZF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45762 all species →	ZINC FINGER RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene03571.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.