Gene detail

Detailed information of gene03876.t1 in Actinoscyphia liui

Genomic Location: chr1:62577690...62606322
NR annotation: KXJ11889.1, Semaphorin-3E [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene03876.t1

ATGACAAGTTCTCTTCAGGTTGCGAGAGTCTGGACGAAAGTGAAACCGAGCAAGTGCCACCTGCTTCGCAACAGTGTACCTTTCCTGGGACACATATCTAAGAATTGGCGTCGCAACAGATCCAGAGAAGTGACCCAAACAGACCCAAAGGAGTGGTCGTGCCCCCTTGTCAGCGTGCAGCCAGGGTACCTGCTACAGGGTGTGGCTATTGATATTCTGAGAGAGTATGATCATGGCAATAAGTACTTGATGGTGGTAAGTGATTACTTTACCAAGTGGGCAGAGTCATACCCAATACCCAACCAGGAGGCTGTTACAGTGGCACAGAAGTTTGTGGATGAGTTTGTGAGTGGTTTCAGTGCACCGGAGATTCTGCACACTGACCAAGGCCGTAACTTTGAGTCTCAGCTGTTCAAAGTGCTCTGCAGACTCCTTGGCATCGAGAAGACACACACCTCTTCATACCACCCAAAGGGGGATGGCATGATCGAACGATTCAACCGTACAGTAGTGAGTATGCTGTGTAATTATGTCAGTGAAAACCAGCGTGACTGGGATGTACACCTGCACCATGTGATGATGGCCTACCGTAGTAGTGTCCACGAATCGACCAAGTACTCCCCCTACTACCTGATGTTTGGTCGCAATGTCAACCTTCCGATTGATATGATGTATGGAAGACCACCCACCCAACCACAGGATACAGTGGTGTACATTACTAGACTGAGAGACTCCCTTGAAAGAACTGGTGTTCTTTCCATATCAGATGAAATGGATGGTGTTACTAGAAGCCCTAGTTTTCCTGATCAAAATGTTTCTGGTGTAATCATAGACCATCCTGTCAACAATGGGTATATATTTACTGGGCTCAACATTGGGTCTGGCACCAGATATAGCAGTATTTACAGGAAGGCTGTCAATGTGTCTCTGGATAAGAGCTTCCTCAGGACTGTGCAATCTGAATACTTTTTGAAAGATGCCAATTTTGTGTCTTCCTATGTTGCTCCTGATAATTTCATTTATTTCTTCTGGCGGGAAAAAGCATTAGAATCACAAAACATGGAGGTGTATTCCAGAGTTGGTAGAGTTTGTTCTTATGATGCAGGAACCAGGTTTGCTCTAAAGAAACAATTCACATCATTCACCAAGTCAAGGTTACTGTGTTCAGTACCTGGTACTGGAGCAGAAGCGTTTGCTTACAACTATCTTCAATCAACATTCAAGTACATCACATCTTCATCAGACATGATCTATGGCATATTTACCACACCAGAGAGTGGTTTGGTTGGATCTGCTGTGTGTTCCTACTCTTTAAACTCCATCCAGTCATTGTTTGCTAACAGTGAATACATGGAGGAAGTGGAAAAACCCAGTGGTGTGCAGAGTAGAGTATGGAAGAATGTTCCACCACCACAAAATGTACAAGACCCAGGACGACCAATGTGCAATTCAAGTCTAAATACATTGTCATACATGAGAGAGACTGCTAAGTTTGCCAAGGAGCACCCACTACTGGCTGACACAGTACAACCAATTAATGGAAAACCACTGCTAGTTTTGCCCAATATAAGATTTACACAAATAGTGGTGGACAAAGTCCAGGCAGTAATCAGTAGAGCCATTCAGTCTATCCCTGTTATATTCTTGGCTACAGGAAATGGTACAATCTACAAAGTTGTTGAAGGCAAATTTTCACCTGACAAGAAGGCAAAGATTGTGGAACAAATCAATGTTTTCAAAGCATCACGACCAATACAAACTTTGAATTTATACAAGAATTCACTGTACGTTGGCTGTAAATCAGCCATCACCAAGATTTCAACCCATAGATGTAGTACCCATAAAACATGCAGGTCATGTGTGCAGCTGAAAGACCCTTATTGTGGCTGGAGTAACAATAAGTGTACTACTAAACAAGAGGCTGGTAGCAGTTCCTGGGTACAAGACATTGTCTTTGGGAAATTCGAATCTGATTGTCCAGAGGAGCCACCAAGCTGCTCAATCAAAATGTCAGTAAATAATCCTGGAGGAACTACAATACTAGAGTGCTTTGTACAAGGCATTCCAGTTCCATCAGTAACACAATGGCAAATAGATGAAGACAAGATAACTACAGGTCCAGAGTATGATATCCAAGACACAGAGTACTCACAGGAACTCTTAGTTCATAACTTTGGTATAAAGAATCTTGGTAAATATCAATGCACTGTGCAAAATAACAAGGGATCTACAAATCACTGTAAACTATCAGTTCAAGGAACCCTCCCTGTTGTGTCATCTGGATTCTCAAAAACCAATGGCCATACTCAGTTCTGGTGCAATGCCAAGGGCTTTCCTAAGCCATCTGTGGTTCGATACAAGGTTATTAAAGGATCAATCCAGCCTGTTACTGCAGCCATTAACATGGATCATGGTGACAGGGCGTATTACTGTGTTGCACATAACACTTTTGGACCTTCTGTTGGCACGAATTTTACAATTGAAGAAAGAAAACTGGATGTTGAGATAAAGATGACTGAAGAGGTTTGGGATGATGAACTTGAAGATTCTGATTCATCCAAGTATAAAGAACTCTCTCTAAAGCTCAAAAATGCTATTGCATATGTTTACTCTAATAACACTTCTTTCATGGATACAACTCAAGTGACATTCAGTAAGGGAAGCGTAGTTGCTGATGTCCAGTTAAGATTTGCAAGCAAACCATCAGAAATAGATACTTACTTGCTGACTGGTTTACAAAATGCAATCTCATCTGGAAAGATAGGCTCAATACAAGTGGAGAAAACCGATATTCTAAAAAATTATAATGAAGTACCTACCCCAGGATATCGTTCTCAAGACCAAGGTATAGACAGAGGTTTATTAGCTGTGGCATTACTAGTAGCCATTGTCCTTAGTGTTCTTGTGGGCTTGCTAATGGGTATTAAATTCCATCGCCAAGCATTACACTATTGTGGTCCAAAAGGACATGATTCATCTATTCGTGAGGACAAAAACGTAAAAAGTCTAAAATGCACAAAGTCTCCAACCATTGAGACTACACGAAGTACTACAGACGAAAAACAAGGCAAATTACTGCCTAACAAAGACAGTAAATATGAACCTAGTGACGACGGTGATCGGGATAGTATAGGGTCTAGTGGAGGACGAATACACATCATTATTGAATCATCAAAGACTCCAGAACAAATATTTCTTGTAAATGGAAAGATCCCCAAGACCTGTTAG

Transcript

gene03876.t1

Protein

Uniprot

Uniprot term	Description
O09126	Semaphorin-4D OS=Mus musculus OX=10090 GN=Sema4d PE=1 SV=2
O42237	Semaphorin-3E OS=Gallus gallus OX=9031 GN=SEMA3E PE=2 SV=1
Q90665	Semaphorin-4D (Fragment) OS=Gallus gallus OX=9031 GN=SEMA4D PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390	SEA	SEA domain	Family	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000082	Domain	SEA domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036364	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan