Gene detail

Detailed information of gene03985.t2 in Actinoscyphia liui

Genomic Location: chr1:64737053...64743117
NR annotation: PFX21010.1, RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene03985.t2

ATGGCTGCCACGAGTTTTGGAGCTCCGTATATCTTGCTCCTCTGTACACTGTTACTGCACCACAAGCTCAACAGAGATAATATTCTTGATCCTGACATCGATGTTCAAGATGAAGTCTTCCCTAGATGTGTTTCGTCCACTCGAGCGAAGCTAAAAGTCAAGGCCAGCAGAACAAGCTATTTCGCCTCAAGGATTAACCACAATCCGAACTCTATCTCCACGTTCCAGCTCACTCGCCTGTCAACTAGCGGGGACATTTCCCCAAATCCTGGCCCCGATAATTGTTCTGCTCGTACCAAAACTTCAGACGGTCTTAAGGCCTTGTATATTAATGCAAGGAGTCTGAAGGCTTTTGTATCTCCCGATGGCAGTTCTACTAAAGTGTGCAAGATTACTCTATTCCAACATCTAGTTTTAAGTGGTTCCTACGATGTCGTATGTGTATGCGAGACCTGGCTGAATGATTCCATCTTAAGTAGCGAACTTTTACCGGGCTACTCCATCTTTCGTCGAGACAGAAGTGACCGCATTGGAGGAGGCATTCTCATCGCTGTTAAAGCTGATATACGAACAACTCGCCGTATGGACCTTGAAAGGGAAAATACTGAACTTGTCGTGATTGAAATTATAAAACCAAACAGCAAATCTGTCATACTGTACACCTTTTATCGGCCGCCCGACTCAACGCCTGATGTTCTTCTACAGCTTAACTCATCCCTTCAAGACACTCGCGAATCCAGCTGCTGTGTTGTCATTGGAGATTTCAATCTTCCTGCCTTGAATTGGTCGGTGGATCAAACTGCCCCTATTAACACCGGAGGGCAAGCGATCGGTGATGTATTTTGCGATCTAGTTGGGGACAACTTCTTACAGCAGTTTATAGAAGGCCCTACACACATAGCTGGGAATAAACTCGACCTACTGATGTGTAATTGTCCAGAAGTCGTGGGAGATGTGTTTACTACAAGACCTGAAGAATGTGAGTTTCCGACAGATCACTTCATTGTAGAATTCACCATCAAACTGAAGTTCAGGCGGGCCAAGCCAGTAAAGCGTCGAGTCTTTGACTTCAAGCATGGCGATTTTGAAGGCCTCCGGTGTTCTCTCTCTCATGTGCCGTTTAATATCAGTTCTACGGATGATATTAGTGAACATTGGTCTCTTTGGAAAGATTTATTCCTGGCCGCAGTGAACGAACATATCCCTACAAAAACCATCAGAGACACTAACTCTCCTCCCTGGATAGACGGAGAGGTTCGCCATTTAATCCGTAAGAAGTATTCAACTCTGAAGAAATACCGTCAGTATAAAAGCGAAGAAAGAAAACGCAAATTACGTCAAATAAGTCAAAATATCAAGTGCCTGGTCAAGAGAAAACACCGTAAATACTTGGCTAAGATCGAGGCTTCCTTTACCACCAATTCAAAAGCTTTTTGGAGCTATCACAAGGCCATCTTACACCACAGGGCAAGTCAAAATACTCCAATCACGGCATCGATAAACGCAGGGGACAGCAAAGATCTCTACAGAAGACTTTCATCCAAAATCATCCTTTACCATAACGGTGAAATGGTTTGGATGGCGCCGACTATTGTTTCCACAGAATGTAAAGTGGATATTCGAAATTTTCCTTTCGATGATCAGCAATGTTATCTTCAGTTTGGATCTTGGACTCACAGTGGTGGCAAACTGGACATCAATTTGCGCGATACGGATATTGATACAGGAAGCTACTCTAAGAGCGATGAATGGATTTTGTTTAACACTAAAGCACATAAAAGTATCAAGTACCACAATTGCTGTCGTGACGATCCATGGCCAACAGTCATATTTACAGTGTTCATCAAGAGAAGGGCCATGTTTTACCTGGCAAATCTAATTTTACCTTGTGGTTTAATTACTATCGTGTCTCTTTTCTCTTTCATTCTACCTCCAAACTCAGGGGAAAGAGTTTCATTAGTCATTACGATTCTACTTTCTGTGGTTGTTTACATGATGATCGTAACTGAAAAGATGCCACAATCTGCTGACATGCCCCTAGCTTCTAAATTCTTTCTATCTCTGATAGTACAGCTTAGCCTTTCACTTGTAATGACGTGTTTTATAATCAGGCTTCACAACATAGACTCGCCATTACCCAAGTGGATGGATGTTGTTGTGAATCAATGCTTTGGAAGAATGTTGTGCATGAACAGGGAAAGAAAAATCAGGCCACCTCCCGAGGGAAAAGACGATATCGATGATAAAGCGAACGGAAATTCATTCTTCCAAAACGAAGGTTATCCAAATGATCCTAACAACGATGCCCTCAAGAGAATTAATGTTGGGAGCGAACAAGAACATCGTAGCAAGACTAAGGGTTCGGTCAATGGGTCAGTGTATGTAAAGAAACAATCACAACCAGACGGCTTTTGGAAACTCCACGCCGAAATGAAAGTATTAGCTGACAAATTGAGAGAGGAAAGCAAGAAGGAAAACTTTCACAGCGACTGGATTTTCGCCACCAATGTTTTGGACAGACTCTTTCTTTGCATTTCGTCTTTAAGCATTTCAATTGCATTTTTGGTTATCTTTTTATCAGTACCCAAAGGTGCCGTTGTAATGTGA

Transcript

gene03985.t2

Protein

Uniprot

Uniprot term	Description
P22770	Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus OX=9031 GN=CHRNA7 PE=1 SV=1
P49582	Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus OX=10090 GN=Chrna7 PE=1 SV=1
Q05941	Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus OX=10116 GN=Chrna7 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR038050	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR006029	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR036719	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05312	CHRNN; nicotinic acetylcholine receptor, invertebrate	-	Ion channels	ko04040	deepkoala