Gene detail

Detailed information of gene04032.t1 in Actinoscyphia liui

Genomic Location: chr1:65461885...65473812
NR annotation: XP_031553757.1, regulation of nuclear pre-mRNA domain-containing protein 2-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VT52	Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens OX=9606 GN=RPRD2 PE=1 SV=1
Q6NXI6	Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Mus musculus OX=10090 GN=Rprd2 PE=1 SV=1
Q0P5J9	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=9913 GN=RPRD1A PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002006 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818 all species →	CID	CID domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12460 all species →	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15559	RTT103; regulator of Ty1 transposition protein 103	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.