Gene detail

Detailed information of gene04124.t2 in Actinoscyphia liui

Genomic Location: chr1:67290624...67309467
NR annotation: XP_031553746.1, threonine--tRNA ligase 1, cytoplasmic-like isoform X2 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene04124.t2

ATGTGTTCGACGGAGAACCCGCATAGAACGATGGGATATCTTAGCTTGATACACTATTTAGAGGAATATAGAAAACGTGGTTTTAAGGAAGTTATTAGTCCAAATATCTACAGCACCAAGCTATGGGAGACATCTGGTCACTGGCAACACTACAGCGAACACATGTTTTCCTTTGAAGTAGAGAAGGAGCAATATGCACTAAAGCCCATGAACTGCCCAGGCCATTGTGTTATGTTTGATCACCGTCCTCGATCATGGAGAGAGCTTCCTCTGCGTATGGCTGACTTTGGAGTCCTTCATCGTAATGAGCTTTCTGGAACACTAAGTGGGTTGACCAGAGTACGACGTTTCCAGCAAGATGATGCTCACATATTCTGTACCTCAGATCAGATTGGCCAGGAAATAATTGGTTGCCTGGACTTTCTGAAGCATGTCTATGGCATATTTGGGTTTTCATTCAAACTCAACCTATCCACCAGACCTGAAAAGTACATGGGAAAGATAGAATTATGGGACAGTGCTGAGAAGGAATTGGAGAAAGCATTAAATGATTTTGGGCAAGACTGGGTGTTGAATCCTGGGGATGGTGCCTTCTATGGACCAAAGATTGATATTCAGATCCAAGATGCATTGCGGCGCTATCATCAGTGTGCCACGATTCAACTAGACTTTCAACTACCAGAGAGATTCAACCTTCATTACGTCACTGGAGAAGGTGATGAGAAGAAACGACCAGTCATAATCCACCGTGCTATTCTAGGATCTGTAGAGAGAATGATTGCTATTCTGACAGAGAACTTTGGTGGGAAATGGCCGTTCTGGCTTTCCCCCAGACAGGGTATTGTAATTCCTGTTGGACCAAAATACGATGATTATGCCCAAAAGAAAGATGTAGTCATCACATTTGCTCTAGCGATTTATGCCAAAGCAAATGAAATCCAGTGGGAATTATCTGATGAGTTCTCTAACACGGTTATTTGGATGTGTGGTTTCCATATTGCTTTAAATTTTCTTTCCGTTTTAGGAAAGAAATACCAGAACTCTGGTTTGGAGGACATCTTGATGGAGTCTGGTGCATATGCACCACGCAGCACAACCTCACTGATGACAGGAATGTCATACAATAGAGGGGTTAAAGAGCAAATCTTTGCAGCAGGATTTCTTTGTGATGCTGACCTCGACCATGGTACAACTCTCAACAAGAAAGTGAGGAACGCCCAGTTAGCACAGTACAACTTTATATTTGTGGTGGGTGACAAGGAAGCCACGTCCAACACTGTCAATGTACGTACTCGTGACAACGTTGTGCATGGTGAACGATCTATTGAACACGTTGTCAGCCAGTTCACTCTTCTCACTAAAGAACGCACCAAGGACAGTGAAGACGCCTTCTAATTTAATCCTCTGGGTCTGTATTAACAGTAAGCTAGCCCTTTATACACTAACGCACCAAGGACAGTGAAGACGACTTCTAATTTAATCCTCTGGGTCTGTATTAACAGTAAGCTAGCCCTTTATACACTGAAACGCTTGTTTTTGAGTACCAGTGAACCTAACGTAAATCCCAGTTCCTTCCGATCCATTTGCATAACAGGAAACCCAGAGAGAGATTTGAGATGCGAATAAAAGTTTATGACTTGACGTGACGTGGTTTTCATATAATCCCTAGCCTGCGTTATGGCTCTTGGGTCACTCTCTGTTGTAATGAGCGATCCACAGTGATAATGTTATTGGATGCAGATTATATGAAAACCTGGTTTATAATGATAAATGAATAAGAAGTAATGATACTGATAAACTAGTTATTTGTAACGAAAGTGGTAAAAATATCACAGTTATTTATAGGATATTGAACAAGTAATTAACAAATAGAGGGTATTACATGGCCGCGCAGAGATACAGATTTTATCTTTGAGTGTTGAGGTGATATCTTATAAGTGAGCGCAGCGAACGAGTGAAGATATTCTCAACACGAGAAGATATAAAATCCGTATCTCCAAGCAGCCATGGTAATATTCTGTTTAATATATAATTAGCAATGACATCTTTTTATGGATTTTTCAATCAGTTCCTTACAGTAGCCATGGCAGTGGTGTTAGACAACATGTTATTTTCACATGTGAAGATATTACTGTCTTTTTAAAAATGGAGAAAAATAGATATTTCATTGTTAATTATATATTAATAAGAGATACGTCATGGTTAAACAGGGTTCACACAGTCATGGAAAGTCGTGGAATTGTATTGCAAACTGTGTAAAATTTTCAAAGCTTAAATCTGCCTTCCATAATTTTGTCCATACATTTCTAAAATACATCGGCTATTGTAAATTGTCATACCACCTTGTCCCAGGTACTAGGGTAGTTCACAGGGTGCCCGTGCATCCCCCTTCCTACCTAAAAACATTATAATTAGCTGACAATGACATGGGCTTTTGGTACGAACAAACCAGTTTGTATCTGAGGTGAGCGCCCCTACTCAATCTGTTGTGCGTATATATAACTTCATTGTATGTCTTTGAAGTGGTCATATCTTGACAAATTTTGCTTTTTCTCATTTCAAACCACCTGCAAGTACGGTGACAAGGCTAGACGAGCTACTGTGTAATTCTTAATATTTTAGGTCATTAATTTCTGGAATCGGTCATGTGGAAATTAAGGTCGCTTTCCATTTACTCGAACTGACTGGTCTGATCGGACAGTTCTTAAATGGAACACGTCAGTTCTGGGAACTGGTTCAGACAGTTCTCAGAACTGACGCTTTCCATTTAAGAATTGACCGATCAGACCAGTCAGTTCGAGTAAATGGAAAGCGGCCTAAGTCATGAAATTCTATTGGGTATTTCTTGTGTGAACCCTGTTAAAGCACTTTTTTATGTCTGTATAATGAAATAACACCTGTAATAATGGCACGCTGTTTAACGTGTAAACAATAAATTATGTGTAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D0R2	Threonine--tRNA ligase 1, cytoplasmic OS=Mus musculus OX=10090 GN=Tars1 PE=1 SV=2
Q3ZBV8	Threonine--tRNA ligase 1, cytoplasmic OS=Bos taurus OX=9913 GN=TARS1 PE=2 SV=1
Q5XHY5	Threonine--tRNA ligase 1, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Tars1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033728 all species →	Domain	Threonine-tRNA ligase catalytic core domain	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR002320 all species →	Family	Threonine-tRNA ligase, class IIa	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11451 all species →	THREONINE-TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004829 all species →	Molecular Function	threonine-tRNA ligase activity	Interproscan
GO:0006435 all species →	Biological Process	threonyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene04124.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.