Gene detail

Detailed information of gene04154.t2 in Actinoscyphia liui

Genomic Location: chr1:68035460...68038299
NR annotation: PFX12014.1, putative uncharacterized transposon-derived protein F54H12.3 [Stylophora pistillata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene04154.t2

ATGAACACAAAATCCGTCAAAGAATTGAAAACCCTCGCCAAAGAGCGCGGAATCAAAGGATATTACCGACTGCGTAAAGCGGAACTTATCGACGTCTTGGGACTTGAGACACAAACAATTAAACCTGAAATCAAATTGAACGAACCGGTTACTCCTGAAAAGCTCAAAGAACCGATTCAAAACACCACCCCACCAGTTCAACCCGCACTTCATAGTTTTTCCAAGATGGCAACAAATTCGTTTTATAAAGCGATCAACGATTTTTCAGACTGGATATATTCATATATTCCAGAACCCATCAAGAAAACCGTAAATAAACACATCAACACGTTGAAGAGTAAAATTAATAAACTTTTTGACCGCTCAAGTGTGAAAAGTGAACCAAAACCAGTGGTGCCAGAATACAAAATTCATAAAGAAGGAGAAAGGTCAAACAAGAAATTCAGTACATATTTTGATAGATATCGTATTGAAATGAAGGAAAACGTCTCAACTATTGATATCATGAAAGTGTTCTTAGAAATACTAAATAAAGCAATAGAAGAACGCGGGTTAGTTAACGGTGACAAAATTCGTTTAATTTTGAGCCATTCCCGATGGTCAAAAACGTTTAGCACAAAATTAATGACCATAAACGGTGATCTTCCCTCATCATTTGTAGAAGAATGTGCCAAATTTGTAGAATACAAAGAGGTGCCCATAGAGGAGTTGGAAATTGATGTTCAATCTACAAAGATTCCTAGAGGAAAGGGAAGACTTCAGGTAACCAAAAATACTATTCGTAATAAAAAGTCAGTTATCACAATCAAGAATTCAGATTCCATTTGTCTTGCCAGAGCAATTGTTACTGCCCACGCAAATTTAAACAAGGATAAATGGACGAAATCAAATATTAAAAACGATTTCAATCAATCTAGACGACTTCAAGGAGAAATGGCTGTAAAATTACATGACGATGCAGGTGTTGAAATGAATGAGTTAGGGAGTTCTCTTGAAGACGTGAAAACCTTTGCAAAACACCTTGGTATTCAGATTAATATTGTAGATGCTGATCAGTTTAACGAAATTATCTTCACCTCTGATAGCGATTATGACTCATCTCAGATGATTTATTTATTCAAGAATAAAAATCACTTTGATGTTATAACGAGCATGCCCGGATTCTTATGTAAAGATTACTTTTGCCATACCTGTAAGAAATCGTATACTCGTCGTGATATGCATAGGTATCCTGCCAAATGCATAGCGTGTTACAAATACTTTCCAGAAGGCGATAAATGTTCTGGTGAACAGATCACGTGCTACGATTGTAACCGAACATTTTTTGGTCAAAACTGTTTCGATGAACATAAACGTAACCGAGCTAAAAAGGAAGGTAACACAAATATCGTTTGTGAAATCATTTTCAAATGTTTAAAATGTGAGAGAACACTAACGTCCGATAAAGATGTGAACATTAAAAATCATTCTTGCGGTTTCAGTAAATGCTCCAACTGTAAAATTTATTGTGATTTGACTCTACATCAGTGCCACATGAAAAAGACAATCTGCAAGGGTGGATATTGTATGAAAGTGTCAAATTGTGAAGAGTTAACTAAAATTAATAAAAAGCATAAAAAGTGTTATCAATGTAAAACATTCACTGAAAAATACATGTTCTTCGATTTTGAGTGTAATCAAGAAACAGGTGTTCACGAGGTCAACCTTGCTGTTGTGCAAGACTTTGAAGGAAATGAATGGGTATTCAAAAATTCCACAGAATTTTGTAACTTTGTATTCTCTGATGAAAATAAGAATTACACGCTAATTGCACATAATGCAAAGGGTTACGACGCACAATTTATCTTGAAGTGGTGTGTAGAAAATAGCATCAAACCTTACTGCATCTACGCAGGTACAAAAATTATGTCAATGGAAATAACAAAGTTTGGAATTCGAATCATAGATTCGTTAAACTTTGTTCAAAGTCGATTAAAAGACTTTCCCAAGACATTTGGTTTTACAGAACTTAAAAAGGGTTACTTTCCCCACTTTTTCAATAAAGAGTGTCACCAGAATTACGTAGGACCATTACCAGCAAAAATGCACTTTGGATTCGATCAAATGAATACCAAAGATAGAAAAGTCTTCCAAGCATGGCATGATGCATGTGTAAAGGAAAATTACGTATTCGACTTTCAGAAAGAAATTCTAGAGTATTGTCGATCAGATGTTGATATTTTGAGGCGTAGTATGTTGAAGTTTAGAAAAGACTTTATAAAACTTGAAAACATTGATCTATTACAGTACATTACGATTGCCAGTGTTTGCATGACTATCTACAGAAGTAACTACATGCCAAAAGATTCCATTGCAGTCGTAAAAGACACCACACGCGGTGAAAATTATAGTAAGATTAGTATTGCGTGGTCAGATTGGATAGAAGAAAAACACCGTATTAAAATTCAACACGCTCTAAATGGAGGTCGAGAAGGGTAG

Transcript

gene04154.t2

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000059 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07498 all species →	Rho_N	Rho termination factor, N-terminal domain	Domain	Interproscan
PF03175 all species →	DNA_pol_B_2	DNA polymerase type B, organellar and viral	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011112 all species →	Domain	Rho termination factor, N-terminal	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR004868 all species →	Domain	DNA-directed DNA polymerase, family B, mitochondria/virus	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33568 all species →	DNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006353 all species →	Biological Process	DNA-templated transcription termination	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene04154.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.