Gene detail

Detailed information of gene04215.t1 in Actinoscyphia liui

Genomic Location: chr2:287970...343409
NR annotation: XP_020893940.1, septin-2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene04215.t1

ATGACTAAAGACAATATTCAGAAACTAAGAGATGAGAACAACGATTTAAAGACACAGATTGGGAGTCTACGTGATGATCTACAACGGCTTAAGGACAATGTTACTAATAGCCAAGAACTCCAGAAGAGCGTTGAATTCCTTAGCAGCGAATACGATGTTATGAGGTCATCTGAGCAAGATTTCAAACGCATTGAAGACCAACTTAGGAATATCTCCGTTAAAGCGAACGAGATCGAAGACGCTATCGAATCAATTATGCAATACAGTTATCAGTACAACGTGAAGATCCTGGGAGTACCTCAAGCTGACCCCACAGAATCTGCAGAGGAAACGGTTGATACCTGCGTCAAATTGTTTAAGGAATTGGGTGCAAATGTCAGCCATCAAGACATCGATATTGCTCACAGATCACCAAACCGCCATCAATCAAACCCTGCCCCAATTATTTGCAAGTTCACAAGAAGAATCGCTAAAGAGGCAGTAATAAAGAGGAGAAAAGACATTAAAAAAGTCGAGTTAGGAAAAATTGTATCCACAGTGCCAGCAGACTCAATGAATTCTACTTTGGGAATTTACGATCATCTTACACCGAACCAACAAGAACTCCTTAAACAAGCAAAGACATTCCAGAGAGAGAACAATTACGACTATTGTTGGGTAAAGAATCAAAAGATTCTATTAAGGGAAAGCCAAGACAGCAGAGTTATCCGTATCAAGAGCTTCTTTGACCTCCAACGGCTCAATGGTATTCCAATCCCTAGCAGCTCTACAGAAACCTATATAGACGGTTCTACTGATCCGTTCAATGACGAACCAGCAGCTTCAGGTCCAGGATTTGCTAGAGGCCATCGCGGACCACGACGCGGAGCTCGAGGAGAGTCAGGTCTTGGCAAGTCCACATTGGTAGACAGCCTGTTTTTGACAGATCTTTATGACGACACTACCATTTCTCCAGCGATTGGTCGCATCCACCAGACGGTCAGCATTGATACAAACACTGTTGAAATCGAAGAAAAAGGAATCAAATTAAGGCTGACAGTTGTTGACACTCCAGGCTTTGGTGATGCCGTAAACAATAACGAATGTTGGCAGCCCATAGTGGATTACATCGATAAACAGTTCGAATCGTATCTGCATGACGAATCTGGGTTAAACAGAAGGAACATTGTTGACACTAGAGTACACTGTTGTATCTATTTTATCAGTCCTTTTGGACATGGGTTAAGACCAATTGACGTGGAGTTTATGAAAGCACTTCATGATCGGATCAATATTGTACCAGTGATAGCAAAGGCAGATACTTTAACTAAATATGAATTGACCAAGCTAAAGCGAAAGATTCTAAATGCAATAGAGAGCAACTGCATTCAAATATACACATTCCCAGCCTGTGACGATGACGATGACGAAGAGTTTGTTGAGATTAATAAAGAATTAAAGCAAAGTGTACCATTCGCTGTTATTGGCAGCAATAAAGTGGTTGATATCAAAGGTCTTCATGTACGGGTCAGGCAATATCCTTGGGGTTATGCTGAAGTCGAAAATCCCGAGCATTGTGACTTTGTTATGCTTCGAACTATGCTTGTTCGTACGCACATGCAGGACTTGAAGGACGTTACTCAGGATATCCACTACGAGAACTACCGTGCACAGCGCTTGTCACGTCAAACTGGTTCACCTACTACCGGCTACAAACGAATTGAACATATGAAGCGTAAAAGTGCCTCGTATGATGTTGACGTCATGGATGAAAAAGACAAAATGCTGAAAGAGAAAGAACTCGAGCTAATACGAATGCAAGAAATGCTGGCTAAAATGCGGAAAGAAATTACCCAGCAGAAACACACCTCATAATACAATACAATACAACAATACCATACTTTATTTAACGTGGGTACTACGCTAAGCTCCAAGCTAGGTCACAGGTAGTCCACATAAGTGTAGTTTTGCACAGGAAGCCCATCGGTTTCTTTTTATCACCATTGGTCTCATAACAACAACACCCCAGCTATTATTTAAAATAAAATGAACGCCAGTAGAGTTGTTTTACTTCATGCCCTGTGCAATAGATATTAGACTAATACACACTAGTAGACACTAATTCCTTTGTTTCCTGTTGTGTCTATTTGACTATTACACTCTAACTATTAGTTATTGTTTCACGGATTTAGTAAAATAACTCTAACGAATGAGTGTATTTTTGTAAAATCCATTTTGATTATAACTTTTCCATAACGGGTTTCATAAAACGTTAAAATATTAACAGATTAGAGCAGTGCGTTGGCCAATAACAACGTACCGCCACTGAGCCAGTAGATTACCAGTTTAACGGATTAGTCCAAAGCTCTTCGGTAACTCTGAAATGTATAAAGGGAGTTTCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43236	Septin-4 OS=Homo sapiens OX=9606 GN=SEPTIN4 PE=1 SV=1
Q4R4X5	Septin-4 OS=Macaca fascicularis OX=9541 GN=SEPTIN4 PE=2 SV=1
Q5R6R7	Septin-4 OS=Pongo abelii OX=9601 GN=SEPTIN4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000675 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00735 all species →	Septin	Septin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030379 all species →	Domain	Septin-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR016491 all species →	Family	Septin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18884 all species →	SEPTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005940 all species →	Cellular Component	septin ring	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0031105 all species →	Cellular Component	septin complex	Interproscan
GO:0032153 all species →	Cellular Component	cell division site	Interproscan
GO:0034613 all species →	Biological Process	protein localization	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0061640 all species →	Biological Process	cytoskeleton-dependent cytokinesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene04215.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.