Detailed information of gene04460.t1 in Actinoscyphia liui

Genomic Location: chr2:5655391...5656572
NR annotation: KXJ06454.1, Retrovirus-related Pol polyprotein from transposon 412 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P05205Heterochromatin protein 1 OS=Drosophila melanogaster OX=7227 GN=Su(var)205 PE=1 SV=2
O55187E3 SUMO-protein ligase CBX4 OS=Mus musculus OX=10090 GN=Cbx4 PE=1 SV=2
O00257E3 SUMO-protein ligase CBX4 OS=Homo sapiens OX=9606 GN=CBX4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000010 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665
all species →		rveIntegrase core domainDomainInterproscan
PF00385
all species →		ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001584
all species →		DomainIntegrase, catalytic coreInterproscan
IPR023779
all species →		Conserved_siteChromo domain, conserved siteInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR023780
all species →		DomainChromo domainInterproscan
IPR052160
all species →		FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR000953
all species →		DomainChromo/chromo shadow domainInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR017984
all species →		DomainChromo domain subgroupInterproscan
IPR016197
all species →		Homologous_superfamilyChromo-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47266
all species →		ENDONUCLEASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene04460.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP