Detailed information of gene04487.t1 in Actinoscyphia liui

Genomic Location: chr2:6331077...6343390
NR annotation: XP_028514832.1, leucine--tRNA ligase, cytoplasmic isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5R614Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=LARS1 PE=2 SV=1
Q8BMJ2Leucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Lars1 PE=1 SV=2
Q9P2J5Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=LARS1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002125 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08264
all species →		Anticodon_1Anticodon-binding domain of tRNA ligaseDomainInterproscan
PF09334
all species →		tRNA-synt_1gtRNA synthetases class I (M)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013155
all species →		DomainMethionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-bindingInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR015413
all species →		DomainMethionyl/Leucyl tRNA synthetaseInterproscan
IPR009080
all species →		Homologous_superfamilyAminoacyl-tRNA synthetase, class Ia, anticodon-bindingInterproscan
IPR004493
all species →		FamilyLeucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolicInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45794
all species →		LEUCYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0004823
all species →		Molecular Functionleucine-tRNA ligase activityInterproscan
GO:0006429
all species →		Biological Processleucyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene04487.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP