Gene detail

Detailed information of gene04490.t1 in Actinoscyphia liui

Genomic Location: chr2:6400244...6433858
NR annotation: XP_028514833.1, leucine--tRNA ligase, cytoplasmic isoform X2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene04490.t1

ATGCGCTTGGTCACACGTGTAACTAAATTGGTAGTAAAAACTGCGGATATTTCTCACTTAAAACACACAATATCATATTGTTCTTGGGGAGTAAAGAACCAAAGCTCTGTTGACATGTCGACTGAAAGGAAAAGTACAGCCAAGGTTGATTTTTTGAAGTCTATTGAGTCTAAAGTGCAAAAGAAATGGGACGAAGAAAAGGTTTTTGAAATGGATGCTCCTGCTATTGCTTCAGATTCCTCTCAAAATGGCAAATTTTTCTGCACTTTTCCCTACCCATATATGAATGGTAAACTGCATCTTGGTCATACATTTTCCTTGTCCAAGGCTGAGTTTGCTTCAGGTTACAACAGGCTAAAAGGAAAGAATTGTTTGTTTCCCTTTGCTTTTCACTGCACTGGAATGCCAATCAAGGCATGTGCTGATAAGCTAAGGAGAGAAATGAAGGACTTTGGAAACCCCCCAAAGTTTCCAGTTAATGATGACAATGAGTCTAGCACCGTGCAGGTACTGAAAAGTAAAGTAGCAGCTAAAACTGGTGGAGACAAGTATCAATGGCAAATCATGCAGGCTCTTGGCATACAAGACCATGACATACCAAAGTTTGCAGAGACTCACTACTGGTTGGAGTATTTTCCACCACTTGCAAAGGCTGATTTAAAGGCCATGGGTTTAAAGGTTGATTGGAGAAGGTCTTTCATTACGACAGATGCTAATCCCTACTATGACTCATTTGTTAGATGGCACTTTTGGACCCTGAAGGAAAGAGGCAAAATTAAATTTGGAAACAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTACATGTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTACATGTAGTATCATCATGGTGACAATGGTCATGATAGCTACATGTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATTGCTAGTATCATCATGGTGACAATGGTCATGATAGCTACATGTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCCAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATAGCTAGTATCATCATGGTGACAATGGTCATGATACACTGTAGCTAG

Transcript

gene04490.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R614	Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=LARS1 PE=2 SV=1
Q9P2J5	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=LARS1 PE=1 SV=2
Q8BMJ2	Leucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Lars1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR004493 all species →	Family	Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45794 all species →	LEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0004823 all species →	Molecular Function	leucine-tRNA ligase activity	Interproscan
GO:0006429 all species →	Biological Process	leucyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene04490.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.