Gene detail

Detailed information of gene04567.t1 in Actinoscyphia liui

Genomic Location: chr2:7741833...7774566
NR annotation: XP_020898046.1, uncharacterized protein LOC110236835 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene04567.t1

ATGTTTGCAGTCTTTCTGCTCTCTCTCAAAGTAGTTGAGGGAAGTTTTCCATGTAAAAAGAATGAGTACATAATTCGTAATGGATCAGCACCATGTTTAAAGTGCAATGATTGTCAAGATGGATATGGACTTCATCCTCCATGTGGCAGCACTTTGGACCATCCTCCCAAGATAGAGTGCTTCCCATGTAAAGCTGGCAAATATTATTCTAATAAGTATGATCCAAGTTCATGCAAAAGGTGTCACCATTGCGCCAGGCATGAAATAGTAACTACGAAATGCACCCCAGAATCCAATACTATATGTTCAGGAACATGCTATGCAGGATGGTACTTTGAGAATGCAACACATAATTGCCAGCCTTGTTCCTATTGCTGCGGAGACAGTAATGACATCATAATCAAAGAATGTAAACATTTGAAACAACATTGCTCAATACATAATGCACAGAGGTGCACACCAACAACTACAGTGACAGCTACCAATATCACGTCAGTTATTGCAACAACCACGGATGGTGTAGCTGACAAGCCTAATCACACTGTCAAGATTGTTGCAGGTATTGCAGGAGGTTTGCTGGCAATTGTGATTATTGCTGTATTGGTCTACTGTTATAGAAAAAGAAGGAAACATATACCAGCCAAGCTTCCTGGACATAGAGATGCAGAGAATGGCATTGTAGCCCAACCCCTCAATGCATGTGGAGTTGCAAATCTAAAGTGCTGTTTAGAAATTGTGGGATTTAGAGAACCATACACAATACCTATGCTCCTTAATGAGGGCACGGATCTGACCCTGGTTCTTGCTGACAGAAATAATGATGATCAATGTGTTAACCAGTGTAGGTTACAGTGGAGGAAAGATGGCGTGCCAGTAACTTATTGCTATGATAGGAAGCTTTCATTAAATGCTATTACAGTTGGTGACTCTGGCAAATTCCAATGTCAAATATATTGCCAAACACATGAGCAAGATAAAAATAGCGATGAAATTGTCATACATGTCCAACCAGTTGCACCTAAAAGGTTAACATTGTTAAATGAGATAGGCTTGGACATGGAACAAAAGCTAGGAATTTTATTAAAACTCAAGCCACCAGACATAGGCAATTGGCATAATGTTGGTGAATATTATCGTATGGACAAAGACTATCTGAAGTCAATAGAGGATGATGACGACAGAGCAGACAAAGTTCTTAAACATTTAAATGCAAAATGTCCTGACCTAACAGTCTTTGAATTCTGTGAATATCTTAAAACAATTGGTCAATTTAAAACTGTTAATGCTCTCAAAAAGGACTTAACTAGAGTGGAAGAAAAGATAGAAGAAGACTCCACTGGATCTATAAATGAATTAAGAGACAGTGGAGTGGAGTTTGACGAAATTGCTTCTCTTCAAGTCCATCTCCCACCAGAAACTAAATGTAGCAGTACAGCTGCTGTGTCTGTACATAAATTAGCAAGACCTACTGACCATTTCATGAAGCAGCATACAAACCTGAGCTACTCGGACTCTAGTAGAGAAGGCTCTCTTGATGAACTACCAACTATCAGAGAATCATCACATCGCACTGACTACACTGCTAATAATCAAGCAGCTGATGGGAAAAATGGGAAAAAGAAGAAACGATCTTTCAATCGACAAGTAAGCAAAGACTCTCAGAAGAGTGCAGGAGGTATGTCAATAAGCAGTCTAAAGGATGCTGTGACTGCCAAGGTATTTAAACGTCACGACTACTCTGAACATAAAGAGGAAGATACTGAAGAGGATGAAGTTGTTTGACCACATCGCTGGTATTGGGCTCCCTGTGGTATGTGTTCGGTGATCTAGTATGTAACGGCTAGCATTCAGGCTTACAAGGGGCATGCATGGTCTCCTCCAGAATGATTTGTACAATATTTCTCCGAGTTTAGAATATATATTTATATATATCGCAAGAGCTTATTTGGAGAACAAGAAATATTCTTCCAATATAACCTGTCGTTTAGAGACAATTGCAATGAAGAACAACGACAAAAGCGATAGAGATTGTGCTTTAGAATTAAAAAAAATAAACTAAGGCCCGGTTCAGACGTCGCATCTCACATGTGCCGAATGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR052302 all species →	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605 all species →	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005035 all species →	Molecular Function	death receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0015026 all species →	Molecular Function	coreceptor activity	Interproscan
GO:0048406 all species →	Molecular Function	nerve growth factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene04567.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.