Gene detail

Detailed information of gene04962.t2 in Actinoscyphia liui

Genomic Location: chr2:14287209...14293179
NR annotation: XP_031560706.1, GATA-binding factor 2-like isoform X1 [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene04962.t2

GGAGTCTATTATATAGGTCTACCGTGCTTACCATTAGTGCCAATGGAAACAGTCAATGCCGAGCATCGCTGGATCAGTCATCCTATCGTCAACGGCCAACACGAAAGTAGTCCACACGCATCTTCAAACAGTGAACGAGGGCAGCCACAAAACTGCGCTAGTGGCAGCATAAATATCGAGCCTACCCAACTCTTGCCACCGGACGAGGTTGACGTGTTTTTTCATCATCTCGACGGCTCAAGCAACGCAGCAAATTGGTCTTACGCATCGGGTAGTCGCGGGTACAGACCTTCTATGTGCCATCAAATGGCCGCGCACGGTCCAACGGCTTTTCAAGACCCACAGAACCAAGCCAGTTCTCAAGGAAGCTGTAGCAGAGTGTTTCTGCCCACAGCGCGTGTGCCGAGCAGCCAAGTTTGCCGGCCACACTTCCACACTCCAATCCAGTGGATTGAGAGCAAACCTGCTCCTCTCCACTGCTCAACGCCAAACCCTGGCTCAGTTTGGTGCCCTCCGTTCCAGCAAAGTCACCGTCCAAGCCCGATGTCCGTGAGTGGATCTTCAACTTCTGCTGGCTCTCACTCAAGCAGCCATCTCTTTTCCTTCCCCCCAACGCCACCAAAGGAAACAAGCTTAGAAGGAGGAACATTGTCCAGTGATTTCTTCAGCTATGGGGGTGATGACAAGAGGCTGAAAGCACTGCAGTACGGGACACCGTTACGTGCTGACGTACCAGCGTTTGCAGGTTATCCTCAAGCTCTTCCACAATACTATGGGTCAGACCTAAGTATGCCTTCTTTTGGGCCGGGTTTGACGGGGATAATGGCTAATAGAAACTTAACTCGAACCAGAACCAAGAGCCGTTCAAATTCAGCAGATGGACGAGAGTGTATCAACTGCGGAGCAACTTCTACGCCACTATGGCGAAGAGACGGATCTGGCCACTATTTATGTAATGCTTGCGGATTGTATCACAAAATGAATGGCTCAAGTCGTCCTCTTATCAAGCCCAAGCGAAGACTATCGGCTGCCCGTCGTGCGGGGACGTCGTGCGCTAATTGCCACACTACTCAAACTACACTTTGGCGTCGAAACCAGAACGGAGACCCGGTGTGCAATGCCTGTGGATTGTATTGGAAACTCCACGCTGTGAACCGACCGCTCTCCATGAAAAAAGACGGCATCCAGACGAGAAATAGAAAAGTTTCCTCGAAAAACAAGAATAAAAATAAGTGCGTAAAGCAAGAACCAAAACTTGGAGATGACAACCGAATGGGCCTCTCGTCCAGTCCGCTTATGAACCAAACCAGCGTTATATCGTCGAGTATTCTAAGCCCGATGGTGGGGCCAAATGGTTTACATACTACGGCATTCAGTCGGCCTTCGATGCCTGGCTTACCGAACATTCATCCTGGACTCTACAACCCTGTAATTCCCTCCAGTGGCTCGTCATCGAATTATAACTCTTCCTTATCAATGAACTCGTCTTGAACTGAAAATTCTCTGTGAACTCAATCGTTACTCGAGCATCCTTGAGGTGCACAGATAGGAGTCGCTGTAGCAAGTCATGAAGATGAGCCGTGCCACGACTTCCAAAGAGTTCAGTATTCCGAGGCAAGGACATAGTTGATGCTGCATTATCATATTCGACGACAAAGTGCAAGGTGTACTTGCTGGGGTTACAAAGACCCTTACTCTACATAGACTTTGAGTATGGACATAACATACATGCTCGCTCGACTGGACGTTAGATGGAGACTAGCTCCTTCGTCCATCACTACGTTAACGTTTTAGGTCGCTGAACACTTCGCAGCGCCGTTAAATATCGCAAAGTCATACATGATAAGATAGAAGACTGTAAAATTTAAACGACTACGAGATAAATGTTTCGTTTCCAAGATAAAATCCTGGTATTTGATTTCATGATATTTTTTGTGTAATTAGTTTTATCGTCGACTCGTATATCAACATGTAGCATCGTGCATCCAAGAGATTGTAAATATCTATCAATATAGAAATCTTTGTACGTATATCTAGGCATCGCACACAACTTACTGAGCTGCGAGAAGATAAAACCAGACACGAGGCCGCAGACAGTGTTTTAACTCTCTTAACTGTAGATTAGAAAGATTCTACGTTCGTATAAGAAGAAAATAGAAAAACTGAACTTTGTACGAACCAAGAAAATTCCACAAAACATTCCCTTTTTGTGCTGTGTGATTCTATGTAATTATATTATGATATTATTATTATTACTACAAAATAAAGAAATGTTCCATGTGAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23824	GATA-binding factor 2 OS=Gallus gallus OX=9031 GN=GATA2 PE=2 SV=1
P23770	GATA-binding factor 2 OS=Xenopus laevis OX=8355 GN=gata2 PE=2 SV=1
O09100	Endothelial transcription factor GATA-2 OS=Mus musculus OX=10090 GN=Gata2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001672 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00320 all species →	GATA	GATA zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR016374 all species →	Family	Transcription factor, GATA-2/3	Interproscan
IPR039355 all species →	Family	Transcription factor GATA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10071 all species →	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17894	GATA2; GATA-binding protein 2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.