Gene detail

Detailed information of gene05036.t1 in Actinoscyphia liui

Genomic Location: chr2:16067643...16077996
NR annotation: XP_044175548.1, uncharacterized protein LOC114973712 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene05036.t1

ATGAAGAGCCTCGATGAACTAGACGCATCACTACTAAAGATGGGAAATAGACTCCACAAAAACAACGTGATAATCGCAGGAGACTTCAATGCCCCTGACATTAACTGGGAAAATGAATCCTCCTGTCATTCTACTGCATCCGATAGACTACTGGAAATTATTGACGAGCATGACTTAAACCAACATGTAAAGGAACCAACTAGAAGAGAAGGAAGTACGCAAAATATTCTAGATCTTGTACTCTCCAACAATCCAAATATTATAGAGAACGTGAAGGTAGCACCTGGTATAAGCGACCATGACATCGTGATCTTTACCGTGAACACGTCATGCCGAAGGAAGAGAAATGTAAAGCGCAAAGTGTACATAAGAAAGAAAGCAGATTCTATCCGTATTAAAGAGGAGCTAGCAAGCCTTTCAACCCAGATGACAACACACAAGTATGATTCCATTGATGAGAAGTGGAATAATTTCGAGGTAAACATACGACGTATAATGGACACCTTCATTCCACATAAAACAACCAGCTCACGGTTTAACTTGCCATGGTTTAACCGTTCACTTCGGCGTCAAGCCAGAACAAAACAAAGACTATATAACAAAGCAAAGAAGTCTGGAGATCAAACTCATTGGGAAAAGTTTCGCACTGCTAGAAAACATATGCACCAGAGTCTGAAATCTGCAAGGGACACATATGTTTCTGACTATCTTGGAAAAGCGATCGAAGAAAATCCTAAACGCTTTTGGTCCTTTATTAAACAACTCAAAAAAGAAGACCCCGGAGTAGCAGATCTCGAAGTAAATGGATCAGTAATTAGTGATGGGAACTCTAAGGCAGAAATCTTAAATGAGTATTTCTGTAGTGTCTTTACAAAGGAGAATCTCACAAGCATCCCTGATGCAGTAGGTGCTTTAAACGCTTTAAAAGAGATTGTAACACTGGTTGGGGAGACTTCCTATGAGATCAGACCATTGGCAAGACGCGGAAAGAGTGTAGTTATGAACCACCGTCGCTTGAAGAGGGACATTGAACGACCCGCACATCTGAAACCACAGTACGATGAGGAGGATACCGACTGTAAGAGTTCAGCAGACGAAGGGGTTGAAGTGATCCAAGTTGTAAATCTTGATTTTGAATTTCCACCAGAGCGTCCAACGTGCAGAAGGGTACAAAGGAAAGATCTGAACGACCACATTGAAGACTTGGAACAACATTTTCCCCTCTCGATTGAGAAGATCTTGTCTCTCCAAAGTCAAATAGATGAAACTAAACATCAGTTGGAAATCCTCTACCCTTATATCTGGAAAATAGATAACTTTAGTCAGCAATTAGAGAAAGCAAAACGGTTAGACCTTCGTATCAAACTTTACAGCGACCCATTCTTTACACACAAGTATGGATACAAACTGAAACTTATGTTAGTTCTCAATGGATACGATGATGATAAGGGTACCCACGTATCAGTATTCCTGGTTGTCATGCGTGGTGAATACGATGGCATATTAACCTGGCCTTTTGATTGGAAAGTCAAGTTCATCCTCATCGATCAGAAACCACGTGCTTCAATGCGGAGAAACATTATAAAATATGGTGATTTTGGAGATGATTCCAAGAGTTTTCAAAGACCAACAACAGAAGAAAACCTCCCTGATGGATTCCCTGACTTTGTGCCCCTTAAAACATTATCAACAGAAAACTACATTGCTGAAGGGGCACTTTTTTTGAAATTGGAGCTTGAGAAATTTAAGCCCGCGAAATAACAGACGAAAATGTAACGCGTTTTTACATTTACTTATTTCTCGATTAACAATTGAGCTAGGGCCACGAGTTTATCAATAATCTCACTATTACTGTCAAGTGTTAGTATAGGTAATCACACGGTTTCGAGTTCAACTTGGAATTAATTTGCACGAGTGTGTCAAAATTTGAGCCCTTTGAAAAACACACGAGTGAAAATTATTCCAAATTGAACGAGAAACTGTGTGATTACTTATTAATCACATCTATGCAAAAATTCAGCAAAAACTGGAAAGCCAAAGACACATGTTGACAAGAATGCACTAGCGAAGTACTCGTTTATTTTACTTTTTCAAAAACCGACACTAAGAACACAATAATACCTAAAAATACATTTTACTAGCAAACAGTAATAAGTAGAAAGACTGTTTCATCTATTTTAGAATTTATAACTCTTTTTAATTTCCAAAACCTTGACTGTGAAAGTATACAATTCAGAGAGAGAGGGAGAGAAGTCTCATAGTAAGTCTCGTAGTAAATCTAAGCCAATCAC

Protein

Uniprot

Uniprot term	Description
P39428	TNF receptor-associated factor 1 OS=Mus musculus OX=10090 GN=Traf1 PE=1 SV=2
Q13077	TNF receptor-associated factor 1 OS=Homo sapiens OX=9606 GN=TRAF1 PE=1 SV=1
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan