Gene detail

Detailed information of gene05098.t2 in Actinoscyphia liui

Genomic Location: chr2:17361903...17389172
NR annotation: XP_020915017.1, MBT domain-containing protein 1 isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene05098.t2

Transcript

gene05098.t2

ATGGCAAGATGGTTCCATACAATGGAGCATTCCTTGAAGAAACGACCTCGTACTGACCTTGTAGGCCTCGCTGTTTTACCTAGAAAGGTCCATGGGGATTTGTCCACGTTAGCTGTGACGCCATTGTTCCAAACACTACAGTTCCCTAACAAGGCCCAAAGGTACAGCAACTATCAAATTTTGCTCCACCATCTTGAAGAAAATCAATCACATCCAAAAAAATCTAAAGACCAACTTGCATTGGGGAATGCATCATACAACAAACAGGGCTCAATCTTAATCCAAAGCTTAATAATTTCTACAAAAATGGATGATTCTGATTCTCAACAGACGGCAATAAACCTTTCTCATCAGACATCATTTGGGCCTATAGATCCAAGCCTAGTAGACAGCCAAGACCAAGTCATGTCACATTACAGTGAACAAAGTGCTTATAATGTACCAACTCTGCCTATCTCTGAGGAATCACCATTAATGGGAACTCCAGACTTATCTCTCCCTGTATCAGATACCACTGCTGTTACTGAAAAACGTCAAGTTCAAGATGTCCTTGTAAAACATGAGCCCATTGCAGAAGTACAAGCTAATGAGAAGCCTGCTGAACTAGTAGAACCTAAAGAGGAACCCTTACCAGAAAACATGGCAAAGTGTGAGTTTTGTAGTCACATTGGAATAAGAGAGTCATTCTTCTCCAAATCTAAACGATTCTGTAAGATGGAATGTGCCAAGAGATACTCTGCTTCAAATATCAAGAAAAAGGCTAAAGATAAGCTGGGCACTACCAAGAAAAAGCATAAACCTACAGGAAGTACTTCCACAAGAAGTACTACAGCTAATGCAGCCTCTGTTGCTATGACAGCCATTGCCAAGGTAACGCCAACAGACTCTGAACTTACCATGGAAACATCACAACAGATGACTGCTCAAAAGCATTCTCAAGGTCCTGGCACTATTATTGGCAGAGAAGTTGGTGAGAGTTGGCAAAACAAGACATTTGATTGGTCAGATTACCTTAAAAAGACAGCAGCCAAAGGAGTTCCAGCCTTTATGTTTAAACATGTATGCATGAACCCATGCTTAAAGGGTGTCCACGTCGGCATGAAAGTAGAAGTTGTCAACTGTGGCATGGATGTTGTCGATGACAGTGAAGTAGCCTTCTGGGTTGCTACGGTGATGCAGTTACGACAACACAGAGTAATGTTACGTTATGAAGGTTATGAGGAGGATGATACTGCTGATTTCTGGTTTGACCTGAGATCACCTAATATTCACCCTGTAGGATGGTGTGCAAAGAGAAATAAGTTACTAATACCCCCTCCAGCAATACGAGACAGATGTAGTAACTGGAGAGATTACCTATTTAAATGTTTATCTGGCGCAAAAACGTTTTCAGCGGAATTTCTTCAACAGCTCCAAGACCAACCTTTCAATCGATTCCAAAAAGGGATGAAAGTTGAAGTAGCAGACAGGAAGAACATGTACTCGATGTGTGTAGCTACTATTGTAGACGTTATTGGTGATAGACTAAGACTACGATATGATGGACTGGAACCTGACGTCGCTGAAGACTTCTGGTGTCATTATCAGTCATCAGAGATCCACCCTATTGGATGGTCGTCCCTCGTGGGACACACCCTGCAGCCTCCCATTGGATGGAAGCACAGTCTAACCAAGTGGAATGAATTCCTTGCTGAAGATTTAGCCAACTCCGTTGACGCACCCCAAGAATTCTTCGTCCAGGACTCTACTGGCACAGCACCAGGTCCTCTACAGTTCAAAGTGGGCATGAAATTCGAAGCCATCGACCCATTCAACCCCAGTCACATCGTCGTAGTAACGGTCATCAAAGTGTTACGATTCAACTACTTCGTACTTGGCGTCGACTCCCTTGCTACCTACTTTGTGTGTCACGCTAACAGCAGAACCATCTTCCCATGCGGTTGGGCCAAGTCACAGTCGTTACCGCTGACCCCACCTAGAGATTACACCCCAGAATCGTTCAATTGGCCTGAGTACTTGGAGAAGACAGGGGGCATAGACGCCCCCGTACATCTCTTCAAGCAGGAAAGACGAATGAACGGGTTTCGAATAGGCATGAAACTAGAGGCAGTAGATCTTCGTGAGCCCGCGCTGGTTTGTCCAGCAACAGTGACTGACGTCAAAGGTCCGTTACTAAGGATACACTTTGATGGGTGGGACGATTCGTATGATCAGCTGGTAGATATGGACTCGTTAGATATCTTCCCCGTCAGTTACTGTCTGTCTGTGGGACACCCACTTCAACCGCCAGGCCCCATGCCTGACAAGTACGTCGAGCGATATGGTCCTGAACTCGAAGGCGGTATAAAGCAAGCACCTAAGCGAAAATCACCGACGATGGAAGATAAAGGAGCGAAAAAGAAATCCAAATGTGTTTATCCGCAAGAAACAGTATATTTTAATCGCAAGTGTTTCCCTGGTCCTTACCTGAACCGCGATCTGGTAAAGAACTTACCCGAGTGTGCACGAGGCTCAATAGTAGGACCAGAGAAACACAACGTTATGAGAATATGTATGCAGAATTTAGTCTCGTCAGCAGTCAACCCTAAGCAGGTTCTAGAATTATTCTCTCGTGAATTTTATCAAAATAAAAAGAATAAAGACCTACAGCTTGGAGGCACCGTGTGCATCGAGATGAAGAGCAAAAACGGCAAGCGCATCATGCGGCGTGTGCGAGTGGCCAACAAAGCTGAACATCTCTTCTCGTACCTGCATCGCGTTTGCCAAGTATTACATTGCTGTCCAGAGATCGTGAGTGGGACACGATTCCCAATGGGTTACTGTAGTCCACTGTGTATGAACAGATCTAAAGAAAACGGTGTTTCGTCAACAAGTGATGGCCGACGTGAAATGGAAATGACCACTCCTTCAAAACCGGAACTGGACGAGAAAGATCCCAGTCCCCCTGAAGAACAAACGGACGAACAAGAAGGCGAGTTACTGTCACTACCGGTGAAAGGTGAAGGCAAGGATTCGCCTCACGAGGCGATGGTTACGTCGACTAGTAACCTACCAGGTGCAAAGGAACAGGAATCAGACGCTGCATCGGTGTTGTTGTACCAGAGCTGTAACAATGGCAAAGACCCTCGTACTTGGAATATGCAGGATGTAGCGAACTTTATGTTGTCTATAGGCTGTTCGAACTATGCAGAGGCCTTTATCAAGGAGGAGATCGACGGCAAAGCGCTACTACTGCTCACCCAAGAGATGCTAGAATCGCTAACAGAAAACAAGCTGGGACCTATGACTAAAATCCACAACGCTGTTCGAGCACTCAAACAGTCATGGGGTATTTAACACGCCCTAGTATGGATACTGGTAGAAACCCGGCCAGGATCCAACACCCGTCACCCATTGAATTATCACGAATTATTGCTTGAATTTTGCATGATATATTCTCCAAAGTATTCCTACTAAATTATCACGACAATTTCTCTCTAGTTCAGTTTTAAAAGTACATTAGTGTTATCAACTGCAAATGATATATATGAAATTGTAATTATCGTGTTGTGCATACCTTACTCTCTGATGAACGCTTTTTTGGATGTATCTAAACGAGGTCTGTTCAAACAAACCCAACATTGTTGAGCTAACACCCTGCTAGCAGAGATATTTCCTATCGAAGGAAAATAACTCTGCTCGTTGGGTAGTTGATGAGTTGCCGCACAGACATTCGGTTCGTTTGGACGTTTCTTAAACTACAAAGTTATAAGTTATGAATGATTCTGTTGAAAGGACCAACTGTTACATATTTGCTAATATGAGCAGCCACGCCCTCCCTCCCATGGGTCGATTTGTTCTCAACCTAAGAAACCACCCCTTTGAACCAAATATGTTAGGACTACTTTAAGAGAAGAAAGTTAAGAGCGAACAAGTGCACACAGACATAGTTTGTCACGGACGAGCCACAGCTCAGTTGCTATAGCTGTGTAGCATCGCCACTGTTTATTATGACGTAGATAGGCTTTATTAGTTTTATTATTAATACAACACTCATGGTCCATCATCTGTATAGTTGTAATACTAGCAAAGGTTTGATAGCAGATTAACTTGGCTAACAGAGTCTAACCAGCTAATTACTTCTGTGTTTAATCAATAATCTCTCTACTTGCACCCATTTGCAAAATTACGCGGCCGAAGCCATTCAAGTGTTCGGTGTTTCTAATACCAGACGTCTAGAGTTGTCTGGGTCGCGTAATTTTGCAAATGGGTGTAGCTGGTCATAGTATCTGACCAACAAGCTAACATGTATTCACCCACAGGGAAAAATTTATAAAATCCGTGAATGGTTTTTATCATATTCCCATTTTGGATCATTTTTGGGAATAGTTCGTTTTTTTATATTTTTTATTCAAAATGGGAATATGACAAAAACCATTCATGGATTTTATTTATTTATTCCGTCTCTCAAACAGTTCAGCGTGATTGTTAGCATGTACCAATCAGTGTTATACGTGAGACTGTTACAGGGAGGCTTGGGGCTGTGTTGGTTTACTTGAATCACCATGTGTAGGTGAAACGTATGATATATATATTTAACAATTAGAAGGCGAACTCGAGATTTCTATCAACTATCAAAGCCGATAGAAATCGAGAGTGAGTCTTCTAATTGTTTTAGTAAAACTCTGTTAGTGTTCATATTGCAAACAAAAGCGTGTTGTGGTGATATTTTTGCGCTTTTTTTCCGAAAAAAAGCGCGCGTTTTCTCTACTCGCTATCTATCGGCTGATAGATAGCGAGTACAGTAGCCAATCAGAATGCGGGATTTGCAATAGAACACTAGTAGAGTTTTACTAAATATATATATATATATTGTTCCTGTTCCGTTGGACTGGGGATTTCTAAATGTAGGATCGCTAATGTAAATATTTAACACCCACTGGGCATTGCTATCACTCACAGCCAATCCATACAGACATTCAGAGTATCTTATTTCCACCCACATAAGACAATTGTACAGCCAGGAGTCACCATAGTAACCCTGGCAACGACTTGGTGTAAGCTCCACGAAATGCACCCTTGGTGTCCAGTGCACCGTTCTATGGCGGAGTGTATGCCGTGTGTTCCTACACCAAGTCGTTGCTGTAACCCTTGTGTCAGTAGACTTTTACAGGTCATGGAAACGTAACCTGGAAAGTGAGGCTGGTTGCCATGACGATTACCATGCCTGTAAAATGTCTATTTTTGTAAATGTAATTCATCATTTTTATAATAAGTTGATGTAATGTTGGCCAATATACTCGCAATATTCTAAAAGTATATATTGTTAATGAACGCTATATCTATAAGGTTTGCAAAGACGTGGCGGCCATTAGCATGATGTCATCACGGCCCGTGACTGGCTGTATTTCTATCGTCAGTAGACCAGTAGTTGCAAACCAACTGTCTCCTATTTATTAATGTAATTTAAATCCAATGCTCTATACATGTATAAATCCTAGGAAAAATAAAAGGTATAAAGTATAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32N90	MBT domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=mbtd1 PE=2 SV=1
Q6DIN3	MBT domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=mbtd1 PE=2 SV=1
Q05BQ5	MBT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MBTD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF12140 all species →	SLED	SLED domain	Domain	Interproscan
PF21319 all species →	zf-FCS_1	Zinc finger, FCS-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR021987 all species →	Domain	SLED domain	Interproscan
IPR012313 all species →	Domain	Zinc finger, FCS-type	Interproscan
IPR038603 all species →	Homologous_superfamily	FCS-type zinc finger superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR038348 all species →	Homologous_superfamily	SLED domain superfamily	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26269	SFMBT; scm-like with four MBT domains protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.