Gene detail

Detailed information of gene05342.t2 in Actinoscyphia liui

Genomic Location: chr2:20993021...21000031
NR annotation: XP_020915064.1, uncharacterized protein LOC110252581 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene05342.t2

ATGTTCTACATCTCCAATTTGTGGCCGTACTTGTTGCTAAGTGTTTACCAAAATGTTCTTGTACCTTGGTTGGCAATTTTTCCTCCCATTTGGACTAACCTTGGAGTCTGTCCTGGTCATTTACCTGCTGCTTTGTGTACCCGCCATCTTGAATCTACTTCGTCATCAAAGACCATCTACTCAGCATCAGCCCTAAAGGCTCTGAGGAAGTCTGTACCCCAGCCTATGGTATCTGATGTAGTTTGGGCCAAAATTAAGGATCTAGGAATACGTAAACCTCCCCGATCAAGACGTGGCGGCCGTAAGAGACAGGCTAAATCAATGTCCTCAGCGACTTCGGAGTCTTCAGAGACAGAACGTGAGATACAAACCCCATGCGGCCCAGCCTCAGTTCCAGACATAATAATAGCAAATGTGAGATCATTAGCTCCTAAAATGGACGAACTTCACTCGATAATCGAAATACTGAACTCTGGAATTGTCTGTATAACTGAAACCTGGCTCAATACATCTATTCCTGACTCTGCCATTCATCTAACCAATCACGTGTGTTTCAGGAGAGATAGGCCTCAAGGACGCGGTGGAGGTGTCTGTATCTATGTTAACTCCCATTTCTCCTGTCATCGGATTGTAGACTTTGAAGTCCCAGAAATCGAATCGCTGTGGATTAACGTCAGACCATTCCGTCTACCAAGATCTATCTCAACCATCTTAGTGGGTATTGTTTATCATCCCCCATCGTGTACTGTTGAAATGAACCACCAATTACTGGACCACATTCAGAAGAACACCGAGTCATTTCTACTTAAACATCCTGATGGACTGATCTTAACCTGTGGTGACTTCAACCCACCTGCTACTGGCCTATCTGAGCGACTAGCTAAACACTTAACTGGTCTGACCCAAGTAATTAAGGTACCAACAAGAGACAATGCTATTCTCGACTGGTGCTTAACCAATAAGCCAAAACTTTTCCAGTCTCCTACACAACTTCCAAAAGTTGGTAGTGGTGATCATCATGCGATATTGATCAGGGCCCGGGCTGCTCTCCTTGGAAGGAAGTCTACTAAAATAACCATTTGGAAGCGCGACAATCTACAAGCCAGCATTGTCAGAATGAGTTACATCCACAAACCTCACACCAAGCCCTTAGAACACAGGACCCCATTCCAACTTCTCGACGCACATGTTGAAGCCCATCCTGACAAGGAATCGTTTGTCTTTCGCGATGAAAACATGACTAGAGTGTCTCTCACCTTCCAAGAATATGAGAGGAAGTCCCGGTTGCTCGCTGCTGCCTTCCTGGAGATAGGTTTGGTTCGAGGTGATAGAGTTCTTGTGATGCTACCAACCAGTATTGAGTTTGTGCTCATCCACATGGCGCTCACCAGGATTGGCGCCCTTGCCGTTGTTACTGAAGAAGGTGCCTTTTCTGCTGTTCTTGGGATCAAGGACTTGACCTGCGTGATTGCTCGCACTAATTCCAGCGCACCTAACCAGGATAAAGTCGTACAGAATATTCAGTCAGCTCTCGATGAAAACAAGCTAAAAGCAGTCGTAGTGGTCAGCCCTAGTACTGGTCCATTGGATCATGATAAGGTTTACCTCTATGAAAAGCTCTTACAAATGGGCCAGACCAACCCTGAGTGTGATAACGCAGTAAAACGCGCTGAAGCTGCCGTCCAGATGGATGATCCAACGTTTGTTACGTTTACATCGGGCAGCACGTCTATCCCTAAACCAATTCAATACACAAACCATAGGTACATCAACGCAGCACGCGAGAATGCAACGATGATGGCTGTTGATGAGGACACGATCTTTTTCATAGATGCAACATTTGACGGGATTGTGGGGTTGTGCTTGGGTATTGGGGTTGTCATAGCAATAGGCTCAACTTTGGTAGTTTTCCCTCCCAAACTCGCATTTCAAGGCGGAATGGTACCAACTATCATGAAGACCATCGAAGTGGAAGCCTGCACGCATGCACATTTTTTGTGTTACTTTTTTCACGACATGACGACGTGCCATGAATTCCATGACATAAATCTGAGTAAGCTGAAGAACATCTTAACTGGAGGGCAGCCAACTGCAGTCCTTCTACTGAAAAAGATCTTGGATATGATGCCTCACTTGACGATAATCAATGTCTATGGATCAACAGAGGCGAATATTGTCTCTAACCAACTGATCACGAAGGGTATCGTTGAGACGTTTGAGTATGAACTAATGGATCCTGGAGATGGTTTGGAGTTAAAAGTAGTGAACGAGGAGGGACAAGTGGTGCCATTTAATACCAAAGGAGAACTGTGCGTACGTTCAGCCTGGGTCTCATTTTGTAACTGGGACTTGATGCTAATCGATGATAAGCCCACAACAGGTCTTGGAAAGAACGGTTGGCACTTCTCTAATGACGCGGCCTCTATCGATGAAAATGGCAAGCTCAGGCTTCATGGCAGAATGGATGACATGATCAAATGTGCCGCTTCATCTATCTCACCTTATGAGATGGAAGACATCCTGTTGGGACACCCGAAAGTCAAGAATGTGTGCGTCGTTGGTGTTCCAGATGAGCGGTTGCACGAGAAAATGTGTGCTTGTGTCATCGTGAAAGAAGGTAACCATGGCAACGAAAACGAGCATCTTGAAAAGGAGCTCCACGATTGGTGTAAAGATAAATGCAGGGTGTCCACGAAAGGGTTGGTATGGAAACCACATTATTATCTTTTTGTGGATGGTTTTCCTCTTACCAGGACTGGGCTCTCAAGACGTCGGGGAAGGGGAGGGTTTCCGACGATGGTTTTAAAAGAACTGCTCCTATAA

Transcript

gene05342.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96CM8	Medium-chain acyl-CoA ligase ACSF2, mitochondrial OS=Homo sapiens OX=9606 GN=ACSF2 PE=1 SV=2
Q4R4Z9	Medium-chain acyl-CoA ligase ACSF2, mitochondrial OS=Macaca fascicularis OX=9541 GN=ACSF2 PE=2 SV=1
Q5R9G9	Medium-chain acyl-CoA ligase ACSF2, mitochondrial OS=Pongo abelii OX=9601 GN=ACSF2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002956 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42814 all species →	AMP-BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene05342.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.