Gene detail

Detailed information of gene05347.t2 in Actinoscyphia liui

Genomic Location: chr2:21085059...21095131
NR annotation: XP_020915005.1, electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene05347.t2

TGAACAAAGTTCAGCATATTCACGTTGTATTAAATTATCGTCCAACAAAAACGTTTATAAAAATGTGGAGAACAAGATTATGTACTTTGAAGACTGGACTAAATATAGCAATTCCCAGTTTACGATGTCGGGCTTTATCGTCTGCAACGGAGCAGTTCCCAAAGATTACAACTCACCATACTATAGTTCCTAGAGAGACAGACGATAGATGGAAAGATGTGGATATGGAACGTTTCTCAGATGAAGCTGATGTGGTTATAGTTGGTGGAGGTCCAGCCGGCTTATCAGCTGCTATTAGAATCAAACAGTTAGCCAATGAAAGTGGGCAGGAAATCCGAGTTTGTCTAGTAGAAAAAGCATCAGAAATAGGCCATTTGCATTATGGTGTCATAGAGTCATTTTTAGTTGGTGGAGGTCCAGCCGGCTTATCAGCTGCTATTAGAATCAAACAGTTAGCCAATGAAAGTGGGCAGGAAATCCGAGTTTGTCTAGTAGAAAAAGCATCAGAAATAGGTGGTCATACATTGTCAGGAGCATGCTTAGAGCCACATGCACTCAATGAGCTTATACCAGACTGGCAGGAAAGAGGGGCTCCCCTTCATACACCAGTAACAAAAGACAAGTTTATGATTTTAACAGAAAAACACAGTATTCCTGTCCCTATTTTCAAAGGTCTCCCTATGTATAACCATGGTAATTATATTGTAAGACTTGGTAATTTTGTACGCTGGCTGGGTGAGCAAGCAGAAGAGCTTGGTGTTGAGATATATCCAGGTTATGCTGCCAGTGAAGTACTGTATCATGACGATGGCAGTGTCAAGGGTATTGCTACAAATGATGTTGGTATTCACAAAGATGGCTCTCCTAAGGACACCTTTGAGCGAGGTATGGAACTCCATGCCAAGGTGACTCTGTTTGCCGAGGGTTGCCATGGTCACCTAGCAAAGGGGTTATACAAGAAGTTTAACTTGAGAGAAAACTGTGACCCACAGACATATGCCATTGGATTAAAGGAGTTATGGGAGATAGAACCTGAGAAGCACCAGCCAGGTCTTGTAGAACACACTGTTGGATGGCCACTGGACCGTAAGAGCTATGGTGGTTCATTCATCTACCATCTTGATAAAGAGAAGGAGGGTGCCCCTCTTGTTTCAGTTGGATTTGTTTTGGGACTTGATTACAGTAATCCATACATTAACCCTTTCCAGGAGTTTCAGCGTTACAAAACCCATCCAGCAGTAAGGTCCACCTTTGAAGGGGGCAACAGAATAGCTTACGGTGCAAGGGCCCTGAATGAAGGAGGTTATCAGTGTGTGCCCAAGCTGGCCTTCCCTGGCGGTGCGCTGATTGGCTGCAGTCCAGGCTTCATGAACGTCCCAAAGATCAAAGGAACACACAACGCGATGAAGAGTGGAATGGTGGCTGCTAAGAGTGTCTTTGAGGCTTTGACAGACGAGAATCGACAGTCAGAAACACAAGGTCTTTACTTAGACTCCTATGAAGCAAACCTCAAGGAGAGTTGGGTGTGGAAGGAACTGAAGAGCGTGCGTAACATTCGTCCATCTTTCCACACGCCGCTAGGTTTATTCGGCACGTTAGCGTACGCCGCAGTATTCTACGTGATTCTACGAGGAAAGGAACCCTGGACGTTCCGCACACCCAAACCCGATGCTGCCTGCCTAACGCCAGCTAAAGATAACAAGGCTATTGAGTACCCAAAACCCGACGGAGAGGTCTCCTTTGATCTATTGTCCTCAGTAGCCCTCAGCGGTACCAACCACGAGGGCGACCAGCCCCCACATCTGACCCTAAAGGACGATACCGTACCAGTTAAGCAGAACCTAGGCATATATGACGGTCCCGAACAGAGATTCTGTCCCGCGGGTGTCTACGAGTATGTCCCGCTAGAGAGCGGCGATGGCATGAGGCTACAGATAAACGCGCAGAACTGCGTTCATTGTAAAACTTGCGATATCAAAGATCCTAGTCAGAATATTAATTGGGTGGTTCCCGAGGGGGGAGGGGGTCCAGCTTATAATGGTATGTGAGTGACTGAACCAAAATATCTATCTGTATATAATTTTAAAGAGATTCAGTATCTGAAGCTTTTTTTTTTTAATAAAAAATATATTTCTTTTTGCTTCCTTAACATCAATGAAGCAAATTTCAGAATACTTATTTAAGCGAAACTTCCAGAACTCGAATTGTTATCGCCTTCCTTTTCGAAGGATTGTACCTTTCCACAAGAATAAATAAAATAACTGTTTTACTATTTACATCAATGTACTTACGGTACATTAAGTGCATTATTGCCAGCAATACGGTGCAGTGAGAACCCCACTGAAATATTTACACGAAATATCGACCCAATGAGAATAAGATCTAAAGCCTGGTTTCCATATAATCGCAACGATCGCAGAAAAAAGTGTTCTGCAACCCTTGAGATCTTTGAAAACCACAAAATTCTCCTATCGCTGCAATCTTTGAGATAGTTGCGATCCTTTTTGAGCCTCGCGATTGAGAATTTTTCATGAAAACCAACGATCGCAACGACCGATCCTGCATTGCGATTATATGGAAACCAGGTCGTATATAATAATTATTATTTTATTTATGACTGAAAAACTCCGTGTCGTATCTCGACGTTTTCATTGGTTAAAAAAAAAAACATTCTCGTCCAATCAAAACGTCGAGACGCGGCACCATGAAATCTACTCTATAACCGGGGACAGGTCATAGCGACAATTTCACTCATGTGAGTGGAAATAACGAGCAAAGAAACAGGTGACATAAATTCACACTGGTTTGATTGCATGCGCCAGGTCGCCGCGACAAAACAATAAAATTTGTCGGTACTGTCCCCTTGTATGTACTGCTCATGCAACCGGTCGCTGTCCCTTGAGTGTGTACGTACACACAGCTTATCGCTGCGATTTGTCGCCTGTCGTGTGTCGAGACCTTTATATTTGAAGCTACATATAAAAATGAGAGTTGCGCACCGATTAGGATATATAATTGTACAGACATTATTCTCATTGTCCAACTATTTACACGTGAATTCTCTCGAGTGATTTGAGACCAGAAAGTAAACGCGTCTACTAAAGGAATCACTTGTTACTACGCAACTTCTTTGTCCAGTCGTACGGCTTCCACCAGTCTGCAAACTGCAGTACTTTCTTCTTATGTTGTTCGAAGTTTTCCTTGTGTGGCTTATGCCAGGTCCATGGCTCTAGGTCCAGCATTCCCCCGATAATTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q921G7	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus OX=10090 GN=Etfdh PE=1 SV=1
Q6UPE1	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Etfdh PE=1 SV=1
Q2KIG0	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus OX=9913 GN=ETFDH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05187 all species →	ETF_QO	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S	Family	Interproscan
PF21162 all species →	ETFQO_UQ-bd	ETF-QO, ubiquinone-binding	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF13450 all species →	NAD_binding_8	NAD(P)-binding Rossmann-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007859 all species →	Domain	ETF-QO/FixX, C-terminal domain	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR049398 all species →	Domain	ETF-QO/FixC, ubiquinone-binding	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR040156 all species →	Family	Electron transfer flavoprotein-ubiquinone oxidoreductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10617 all species →	ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004174 all species →	Molecular Function	electron-transferring-flavoprotein dehydrogenase activity	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00311	ETFDH; electron-transferring-flavoprotein dehydrogenase	EC:1.5.5.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.