Gene detail

Detailed information of gene05353.t1 in Actinoscyphia liui

Genomic Location: chr2:21138962...21156293
NR annotation: XP_031549342.1, circadian locomoter output cycles protein kaput-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene05353.t1

ATGAAGATGCTCGCTTCGTTCCATCAATCTTTACTGGAGTTCGGCGAGAGTAAGACTGAGGCTTACAGAATGCGATCTAAAGGTGGACAGTGGGTGTGGATGAAGAGCCGAAGCTTCATCTCGTACAATCACTGGAATTCTAAGCCTGAATTCTTTTGCAGTAAAAATGTGGCTGTCAGTGAAAAACAAGAGTTATTCACTCCACAAGTAAAAAATATCACGCACAACGCTCCACAAATTCAAGCAAGCAGTCGGTCAACTTCAGATGGTATATATTCTCAACAAAGTGAACTACTTCCCAGTTGGATTACTGACACTATACCACAGTCGTCGAGGAGAACCACTCATGGAGGAGGCAAAGAGCTGGTCCATGTCAGCAGCAATTTAAGTTTAGCGGACGTCAGTTCGTCAAGAACCATGAATTCATCTCAAAATATGAGTACAATTTCTGATGATCAAAGTCGTGGACATTCACTCGAAGAAGAAAGTGACAGCACCCATTCAGTGGATCTATCAATGCCATACGCAGAGCTGGAGAGTTTCATCGAAGCACAACGGCAATTACACGAACAGTTGACGTTGAAACACACGATACTTGAAGAAGCGATTACTAAACAAAAACATCAGCTGCAATCCGTGCAACAGCAGATTTTACTAAATTTGCAGGCACAGCTGACAATCGATCCAAGCAAGAGTCAGGAAGTCTTCGAAGAACATTTTGGAAAAGCTAAAAAATTCAGCGAGCTCCACGGAGAACAGGAAAACAAACAAAAAAAACTTTTAGAGACTTTAAAAGAAACAGGAAGAAGAGTAGAAAAGCGTAATCGAAAACAATTGAAATACTATCACGAGAAAAGGCCCAAGCTATCAAACACACCTAAGAACTCGACGTTTGCTTCTTTGTTTACCCAAGGTTCCGGTGAAATGATAAAAACTGCATCAAATCAAAGATCAATGCTTGTAGGCCACGAAGGAAGCCAACCTTCCTATTCAAAAGTATTACCCCCAGAACAATTTGTCCCAGCCACACAAGCTGAAAACATTCAAATAGTAGTTCAGAATCAGGGTGAATTGGTACCGCAGGCCAACGCCCAAGCACATGTATTGCCAACTTTCACTTCTCAGCTTCTACAGCCTGTACAGTTATCGTCTCAAACTCAGCGTGCTTTCCAGAATGTTGAAAATACGACAGGGCAAGCAAGTTCATCGGTCACTTCACCAATAGAACCTCAACCGCAAATAACTATTGGAACCAACGAGCCTACTACACTTAGTAATATACAGAACCTATTGACGGCGTCGTCACAGAACCCTCAGAGAATGCAGAAACTGTTGTCGGGTTTACGGTCCCAACCCGAAGTGGCACAAACATTGCTCGACCTACTGAAACAGGCGCAAGCGTCGGAATTGAGCGAGAAAGACTCGTTGTTGTTTAGTCAAAGCTTGCAAAATACGACCGATCAATTTTCTGTCGCTCTCAATACGACCATTACCAATCAACCGACCTATCAACCAAGTTTTAGTGTACAAAAAATGCAACAACAACAACAACGACAACAGCAGCAACTGCAGCAGCGTCGAAACCATCACCATCACCAGGTACAAGCACAAGCACAACAGCAACAAGGGAACAAGAGACACCAACAAGGGAAACCAAAGCAGTATTTCTCGAGCTTTTCGACGAAGAAACTGGAAGCCATGATTTTGACCTCGTCTCCAAAGGGCCACACAAGTAAAGAAGGGTCTGCCGTCTCGTCTTGTGGCGTGGTAAAAAGCAAGCTACGTAAAGAAGGAAGTTCAGACAGTCCCTTGCTCATCCATCATCAGCAATTACTCCAGAATCACCAGGATCAACGAAGACTGTTGATTCGACAGCAGGAGCAGATTTTACTGTCCTGTCAACAGTCCAGGCTGCCACAAGCTGCTACCGCTACTAATCAAGACATCTTTGCACCCTTCGCACAAAGCATATGTTCACAGCAAGATTCATCTCGATCTCTTCTGACCAATAGCCAGCCGGGAACGTCGTCAGTAGATCAAGAAGCTCAGCCATCGACCATCAATCGTGGACCATCTCAACCTTCGACATCGTGGGATTCAGAATCGCCAAATTTCGAACTTAACGACGCTGACGAAGTAGTGCTGAATCTGCTCCTCGCACAGTCATCTATGGACACTCTGTTTGATCTCAATCCTGATAGTTTACTCGAGTATTTAAACATGAACCCTGATCTCACCTCTGATTAA

Transcript

gene05353.t1

GACACGAGTCAGTTTGACCTCGAAAATATAAGTTATGCAAATCAGGACGATTTTGTATCAGATATACAATACCGTCACGGCTTTGATTCCTATTGTGTTTTCTTCATGAATTATTAATGAGTTTGATAAGTACTTTTCGCGTGCTCTGATTGGCTACTCAATCTCGGGATATCCTTCATTATAATTCAACAATAAATTTCCCTTCGCTCTCATTGGTCAAAAGTCGATCACGTGACGCGATAGTGCCCGCTTCGGAGGGCGACCATCAGCGCTTAGTGCCCGCTGAGAGAGTGAATTTTGTTTCGTTTTAAATAATGAATTCTTTGAACGCTACTTTTCGTTCTTTTGACGAGCACAATCGCAGTTTGATGTATTAACCAATTAGATTTAAGAACGTGAATAAAATTGACGGCTTTTTGCAGTGAAATGGTTTTCTCGTGCGTTGTTTTCCCCCGCTAAGGAAAATGTTATTGTTGAATAATAAAGACAATAGAGTTGCCCTTGGAAAGTGGATGTTCCTCATAACGTTCTCGGGCGGCTATTTGTTTTTCTGAGCATCCACTTTCCGTTGGCAACTATCACAGCATAATTCCCTCCTGGAACTACTCTATTTTTTAATTAGTAGAAACACCCTTAGCGGGCAACTATCACAGCATAATTCCCTCGATGGAACTACTCTATTGTTTAATTAGTAGAAACACCCTTAGTGGTCTATCATAAATCCTGCAATCTGATTGGCTGAGCTACTATAGTGATAGACCACTAGTAGCGAAAAGTGCCGGTTTTGAAAACCAAAACAATGGCGGAAAACTGGAAAAAGTCAATTGACCGACTAGTGTGTTTCTACTAAAACAATTAGACTACTCGTTGTTAAATAGTTGGCGAGGGTCGGGCAGTTTTGGTGGTATTCTAATTCTCGATAATCACTAGCAGTGAAGGCATTTAGGCAAAAAAGCGAAGACGAAATTAACGATTTGAAAGAAAATGCCTTTCCGAAAAACACGAAAGATGCAAAAAAATTTGTTCTGAAACTGCCAATTTTACAACAAACCCGAGGAAAAACATTTTTAAACTTTCAAACGGAGAGAAAATATCAACAGACAGCTACAACCATATTTTGTTCACATAATCAAACAAGCACATTAAAAGTTCAGTAAAATACTTTTATTCTGAATATTTATGTCTCAAATACATTTTTCTCAGTTCAGAGGCGAGTTTTTAACGATATTATGTCCACTTTTTCCAATATGAAAACTTGACAGCAAATGACCGACGAGTTCAAAGATCGGCAGCAAAAGTTCAAGTTAAAAAATCTCGTGAAATACAATCAGTCAAGAGAAAAAAACTTGACAGAAACATAGGTACATTTTTTAAAGTCTGTTATACAAACACATGGAACTGAAAGCAAATACCTTAAAAAAGCAAATTTTCTCTCCAAAACTCTCTTCTGCCTGACTCGTCTTGTGAGCTCATGTTTCACGAAAACTTTGCTTTGAAAGCGACACATTTTTGCAGTCGAACTTTGGTGTTTTTAAGGTACTGAATTTGAATCATTTTCTTATTTATTTACCTTTTTGGGTTTGAATAAGTTATCTCTGTCGTTGTGGTGATAGTTATGAAGATTGAGAGTATTATAATCTGATTTTTTCAACTTTTTTGTCACACGTCGATCTTTGACTCGTAGCTATTCGTCCCTTGTCTCGCGGCTCAACAGTTTATGAAATAAAATATTTTTTCTTTAAAATGCTTATTTATTTTTATTTTTTCAAATAATCACCTGTGTAATTATACTAAAACAATTATTCACATCGCCTTCGGCTTATAATTGTTAATTATTATTCAACACATCGATACATTGCCCAAATATGGGAAAGTTGCAATATCTGTCGCCTTCACATGTAAGACAGATATCCTGCGATATATGTCATCCAAAATGAAGAACGCGCCAGAATCATTATATGAATTAAAGTTGTACACTTTAGGTAAAAAGAGTGTTTTGTTATCAATCTGTTGAATAATAAAACAGTTATTCTGCTCGATCTTGCGGGATATCGCCCGTTAACTATTCACCACCGAACAAGATTCCCGCGCGCGAGTTAACTAGTTATTTGAAATATTGTTCTTCTTGAAAATAAAACTCATATTTTTGGCTGGCTATTCACTTGTGTGGTATATACTAAAACAATTATTCACCTCCACTTTGGTGAATAATTGTTAATTATCATAATGAACGGCCTTTCGCTACCATAGGAATGGACTATGACTAGTTGTAAATCTAGTCAAAAAGCCTGTATGCACATGAGTAGTATGAGATGAAGTAGCAGATGGCACAGTTGGTGGCGTAACAGAATTAACACGCAAATGAATTCAGTATTCAATGCATCACTTGGTTTCCGTCGTTGAGTATTTTTTCACCTCGGAAACCCCGAAATGGTTTAAGAATCCCAAAAGCTTTCAGATTTTTTATGGAGTGACTGCAGTGTCAATACTAGAGCGATTTGCGGTAGGTTCATGGCTTGACAGGATAGGAAAATTTTAGCTAAAGCCTGGTTTCCATATAATCGCAACGATCGCAGAAAACGGTGTTCTGCGATCGTTGCGATCGTTGGTTTTTATAACAATTTCTCAATCACAATAATCTAAAGGATCGCAACTATCACAACGATCGTAGAGATCGAAGAATTTTGTGTTTTTTAACGATCGCAAGGATTGCAGAACACTATTTTCTTCGAATGCTTTCGATTATATTTCGGAAACCAGGCTAAAAGAGACTGTCGAGAGTGCTCGCTTGATCTGAGAATAAATAAGTGCCGATTTGGGATGATATTTTTGGGACTTGGATAAAGAAGCGTATCGCCATATTCGCCATATTCGTTGAGTCATTGTACAGACCGGCTTCAACGAACCATAGAAAATCCACAGCATATACGATGCACTGGGATGTTGCAGCCCTCTGAGACAGTAAACGAGTCGATCACAAGAGCTAGAAGAAACAGACGTTCAACTAATTAAGCGGCACATCTATTATCCTATAAATATTACATTTCAGCCAATCAGAGCTCACCATTTCTATGAAATACAGAGTGGTATTTCATGTTTTTCTTTGAAATGCAGGTTTCTATTGTTCAGTAACCAATCAAAATGCTTTACAAATCTTCCCGCCTTTTTCTTGTAGACGCGCGCGCGTCGCGTTGCTACGATTCGAATCTTTGCATAAAAATTTCAAGTTTTTGAAATTCAAAGCAAAATATCAAGTTCAAGAACAAATTCAAATCTCCCTTCACTTTCAGAAGAAACGTTAGTGGGATTTATTGAGTCGCAGAATAATGCAAAAATAAAAATGAAAACCATGGCCGGTAAACTAATGTTAACACAGCGAAATTCGACAGTCGACAATTCCAGTTTCAATACAAAACGCTTCGTTAAAAAGCGCAGTCTTAATTGTTGATCACTTGTTTATAGGATAATATGGTTATTTCATGGTTTTCTATGGATTACGAGCGAAAATACCACTCAAAAATTATATTATTTTGGTATACAACTCGCCTAAAGGCTCGTTGTATACGAAATTTTGTCGTGAAATATTCGCCGGTATTCCATAGAAAACCATGAAATAACCAATAATTATCTCGGCAAAATGTTCCAGCAAATCGACCGGAAATATCCCATTTGGTGCAACCGGGATCTAAGTGTAATGATTCTTTCAATAGGTCCATCTCTATGACCGGCTATTGGTCATATGAACTTCTCGGTACTTCGCTGTATAACTATGTACACCATGATGATATGAAGATGCTCGCTTCGTTCCATCAATCTTTACTGGAGTTCGGCGAGAGTAAGACTGAGGCTTACAGAATGCGATCTAAAGGTGGACAGTGGGTGTGGATGAAGAGCCGAAGCTTCATCTCGTACAATCACTGGAATTCTAAGCCTGAATTCTTTTGCAGTAAAAATGTGGCTGTCAGTGAAAAACAAGAGTTATTCACTCCACAAGTAAAAAATATCACGCACAACGCTCCACAAATTCAAGCAAGCAGTCGGTCAACTTCAGATGGTATATATTCTCAACAAAGTGAACTACTTCCCAGTTGGATTACTGACACTATACCACAGTCGTCGAGGAGAACCACTCATGGAGGAGGCAAAGAGCTGGTCCATGTCAGCAGCAATTTAAGTTTAGCGGACGTCAGTTCGTCAAGAACCATGAATTCATCTCAAAATATGAGTACAATTTCTGATGATCAAAGTCGTGGACATTCACTCGAAGAAGAAAGTGACAGCACCCATTCAGTGGATCTATCAATGCCATACGCAGAGCTGGAGAGTTTCATCGAAGCACAACGGCAATTACACGAACAGTTGACGTTGAAACACACGATACTTGAAGAAGCGATTACTAAACAAAAACATCAGCTGCAATCCGTGCAACAGCAGATTTTACTAAATTTGCAGGCACAGCTGACAATCGATCCAAGCAAGAGTCAGGAAGTCTTCGAAGAACATTTTGGAAAAGCTAAAAAATTCAGCGAGCTCCACGGAGAACAGGAAAACAAACAAAAAAAACTTTTAGAGACTTTAAAAGAAACAGGAAGAAGAGTAGAAAAGCGTAATCGAAAACAATTGAAATACTATCACGAGAAAAGGCCCAAGCTATCAAACACACCTAAGAACTCGACGTTTGCTTCTTTGTTTACCCAAGGTTCCGGTGAAATGATAAAAACTGCATCAAATCAAAGATCAATGCTTGTAGGCCACGAAGGAAGCCAACCTTCCTATTCAAAAGTATTACCCCCAGAACAATTTGTCCCAGCCACACAAGCTGAAAACATTCAAATAGTAGTTCAGAATCAGGGTGAATTGGTACCGCAGGCCAACGCCCAAGCACATGTATTGCCAACTTTCACTTCTCAGCTTCTACAGCCTGTACAGTTATCGTCTCAAACTCAGCGTGCTTTCCAGAATGTTGAAAATACGACAGGGCAAGCAAGTTCATCGGTCACTTCACCAATAGAACCTCAACCGCAAATAACTATTGGAACCAACGAGCCTACTACACTTAGTAATATACAGAACCTATTGACGGCGTCGTCACAGAACCCTCAGAGAATGCAGAAACTGTTGTCGGGTTTACGGTCCCAACCCGAAGTGGCACAAACATTGCTCGACCTACTGAAACAGGCGCAAGCGTCGGAATTGAGCGAGAAAGACTCGTTGTTGTTTAGTCAAAGCTTGCAAAATACGACCGATCAATTTTCTGTCGCTCTCAATACGACCATTACCAATCAACCGACCTATCAACCAAGTTTTAGTGTACAAAAAATGCAACAACAACAACAACGACAACAGCAGCAACTGCAGCAGCGTCGAAACCATCACCATCACCAGGTACAAGCACAAGCACAACAGCAACAAGGGAACAAGAGACACCAACAAGGGAAACCAAAGCAGTATTTCTCGAGCTTTTCGACGAAGAAACTGGAAGCCATGATTTTGACCTCGTCTCCAAAGGGCCACACAAGTAAAGAAGGGTCTGCCGTCTCGTCTTGTGGCGTGGTAAAAAGCAAGCTACGTAAAGAAGGAAGTTCAGACAGTCCCTTGCTCATCCATCATCAGCAATTACTCCAGAATCACCAGGATCAACGAAGACTGTTGATTCGACAGCAGGAGCAGATTTTACTGTCCTGTCAACAGTCCAGGCTGCCACAAGCTGCTACCGCTACTAATCAAGACATCTTTGCACCCTTCGCACAAAGCATATGTTCACAGCAAGATTCATCTCGATCTCTTCTGACCAATAGCCAGCCGGGAACGTCGTCAGTAGATCAAGAAGCTCAGCCATCGACCATCAATCGTGGACCATCTCAACCTTCGACATCGTGGGATTCAGAATCGCCAAATTTCGAACTTAACGACGCTGACGAAGTAGTGCTGAATCTGCTCCTCGCACAGTCATCTATGGACACTCTGTTTGATCTCAATCCTGATAGTTTACTCGAGTATTTAAACATGAACCCTGATCTCACCTCTGATTAACAGCGAGAAATTGTAGTGACCTACTATCCATCCATCCATTCATCCATCCATCCATCCATCCATCTATCCATCCAACCATCTATCTATCCATCCATCCATCTATCCATCTATCCAGTGAATACAGTAGTTTGTAAATAGTATGTAAAATTTATACCATTTGTTTGTAAATAGTATGTAACAAAAAATGGTATTTTATCAAACCATATACAAACTATTTACATAATTTGGATTTTCCAGAGGATAATATATAATGTAGTTTTTAGTTTTTGAGTCCATTTTATTAATCCAGCGAATGTGCATGCGATACTAATCGTATGCATCCTCATACCCGTGGCCTTTTTGGCTTGAAATATGAGGAGAGAAAATATATTTTCCATATATATATATATCTTGATGAGGTATTTTGTAATACTATTGATACACAACATATTTTGATGGAAAAATAATAAGAAAAAATATTTATTAGAACCATAGTTAATAGAACGAGATGGTTATGAAACCCTTTCTTTCTTTTTGTTCGCTTTTTCCAACCATGACCGTGCACAAGACAAAAACATTCTTGCATATACAGCCAATCAGCCAATGAAAACGTTTGGGTCTGGTTACTGAAGCATAATAAATGAACATAAAACAATAGATTGTGCACGGTCAAGGACCTACTCAACATCCACGCATGTTTGCTCCTTTGAAGCCTTTTGAAGTTTGCTGAGTTTCATAACCATTCTCCTCTATGAACTATGCACGTATTCAGTTTCCAAGAATGAATAAATGTGAATTTGTAACACT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008377 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047230 all species →	Family	Circadian locomoter output cycles protein kaput-like	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055 all species →	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513 all species →	Cellular Component	CLOCK-BMAL transcription complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22525	MKL; MKL/myocardin-like protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.