Gene detail

Detailed information of gene05517.t1 in Actinoscyphia liui

Genomic Location: chr2:23424400...23429459
NR annotation: XP_028515329.1, uncharacterized protein LOC114575181 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene05517.t1

ATGAAACTGGATACTCAAACAAAGACCGGCCGTCCGCAGTTTTATAAAAGTGCAGAGAGCTTGAAATCAGCACTACGAAAAGCGCGGGAAACCCTCGCCATGGCAACGCTGTTACCATTAAGTTCATCTCGTCTCCAGACTCCAAGTGGTAGCACCTCGGACTTAAGTGACTGTAGCAGCGACTATGGGTACTCGGCATTACATGGGGCTGTTATATCACATGATCTGGAGTATCTAGATTTCCTGTTAAGTTCTGGCTGCGAGTTGGATCAAAGAGATGAGAATGGCTTCACAGCTCTACATGTGGGGACACTGCAGAAATGTGTTGATGGTGTTCAGAGGCTGATTGGTGCTGGTTGCAACATCGAAAAAAGGACAAAGGAAGGAATGTCTTCACTTCACATAGCCGTTGATCTTCAAGACAACGACCAAGTGGTGTCCCTCCTCGCCTCGTCAATACCCAACATAAATATCAAGAACAAAGTAGGACGAACAGCACTTCATTTGTCAGCAAAGTCAGGAAACGAAGAATACTTGAAGATCTTACTTGACGCTGGCTGTAATCGTGACATCAAGGATAAATTTGGAGTCAAAGCGGTTGACACTGCTAGAGCAAATAACCATGAAGAATGCGTTCAACTCTTACTTCATTACGTTGCGAAAAAGCGTGATTTTGGAAAACCTGAAGACGAGAACAGCAACTCAAGAGTGTCATGTAGAGATACAAAACCTTCTTTTCTTGCTGACGGAAAGAAGAAGCGACACGACACTGAATTACCAACAAATGCTGGAAATGCAGTCACGGATGACAAGTCGAACGATACGTCGTCTTCTATCTCTAGTGTTGTACTTCTTGCTTCTTCGATATGTGAAATCAATGTGGAAAAGGCAAACACGACTTTAGTGGAAGATCACGAAGAGCCAGCTTTAGACCTTCAGCCAGAGTGCGCAGACTGCGCAGAGTGCGCGCAAACTATTCACAATGAAATTGTGTCGCATGAACTAGATGACATCATGGATAGTGATTCTAGTAGCACTGGCGACAATAAACTTACTACAATATTTCCCGATTTGCCTTACTATGATGAGACGGAAATGTGTTCTTCTGGACTTATAATTATATCTGATGTGAACAAGAGGACGATTTACCATCAAGAGAATATGGAATGGGACAACACCTCGCCTTCCTTGGATGGACATCATAACCAGGAAAGTACTGATGCTCGTCTTGAGAGTACTTTGATCTCACAGTCAACAAATGATCTTGGTACTTCTTGTTCATTTACCAGTGATCCAATCGTGGCTCCTCTATCAACTTCCCACCATCAACAAACAACCTCTACCACCTCACAAATGACTGCGACGCTCTCTAAAAACGTTTCTCCATCCATTACAAAAGCGAATCCTTCCAATGGAATGAGGGTTACATCCTTGCATACGAGAAAACTTCCACAGAATGGTTGTCATGTTGATGAAAGTCGTCCTGTAAGCATGAAAGATCTGTATATGGTCGTCTCTGCCATCTCAAGATTAGTAAAACACGAGCAGCACTATTCGTTGAGTTTGACGACTAAACGCAGCGAGTCTGATGACTGCAAGAAAGAATTGTTATCATGTATGGCAACCATTCCTTTATCTTTGCCAAGTTTTGAAGTAAGAAAGGAAAGTTTGTTTCACAACTGCAAGATGCTCACGAAACTGTTTACATTTGACAACTTCAATACAGATAAAAAGAATCCTAATGATATACTTCGCAAACTTTTGCAAGACCTCAAAATTACCATATCAAATGCTACCGCTGGTGAACATTGCAAGAAATTTGTTATCAATAATAACTTGGAAATCTCGCCTGAAAATAGACTACACTCGAGTCCTCTCCTGCAAGACAAACCTCGATATTTTGTAGAGTTATTCCTTGCAGCAAGCGACGACATTACCGTGCATCGTGAAGACTCATGTAAAACGCTGGATGAACTGTGTACTCTCCTTTCTTCCCAAGATTTTTCATGCATTCAGGGAACTTTGGTTGATAGGATTTTCACTCGCACAAAATTTCTATCAAACCATGTTGAAAATGCACAAAGTTCGTCAACACATTGGATGGGGATTTTCCTCGGTTTAGAGTACGTCATACGACAAGACAAAACTCCCAGTTCTTTCGCGTCAAGTGTTTTTGAGACCCTTATGAATTCCTCCGTCCCCTTGGCGCCAGTTGTCATGACAACTAGGCCTGACTTTATGGAGTTAACAATAAAAAAGTGCTTGCGTGTGGAGGAGTCACTCTGGGATGAAGATAAATTTGCTGAAGTTTTCTTATTCATGAGCCATGTCCTTGTGAACAGCCAGTCTCTGATGCTCAAATACACAGATGTTCTTTTGAGAGCAGCTTTTTCTTGCTGTCAGATAGACCACACGGCGTTGTGCTCGTGTATTCTCGTGCGTCTGGGGCTTCTGAAGAGTGAGTTAAAAATCAAGATTTTCCCACATCTGAAAGGACCGCTACTGGCCATCACACACGTGTTCGCTCAAGATTACTTCCCAGTACACCTTGCGGGCTTGTTCGTTTCGTTTTTGGCCAAACCGAGCCTGCGGTTTCGGAAAGTCAGCGAACTGCACGCACAGGCTCTGAAAGCCGCCATGTTGAAGGAAATTCTTGATGAAGAGGCTCTTCTTGGAAAAGGCTTGAAGCGCATTTGTGATGTCCTTGCGCATGGAAAGTACTGGGAAACCGCATACCAGTGCTGTGATGCCCTATTTGACAAGTCTTTTAGTGAACATGCGCAGTGTTCACCATTGGAGCAAGGATCGTCCATTCTTGTGCATTTGGGTCTAATCAAAAGTGAACTCCCAATTGAGGTGATCAAGGACATCAAAAATGGGCTGAAGTTACTGCAACATGCCGCCAATGGTCGTAAAATCCCAGAAACCATTGCGCCAATGCTTGTGGCTTTTCTGAACAAGGACAACAGGAAGATGTATCCCTGCAACGAAGAAGTTGCGAAAGTGGTGAAATCACTGAATAAATAA

Transcript

gene05517.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46061	Ran GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Rangap1 PE=1 SV=2
P46060	Ran GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=RANGAP1 PE=1 SV=1
O13066	Ran GTPase-activating protein 1 OS=Xenopus laevis OX=8355 GN=rangap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24178 all species →	MOLTING PROTEIN MLT-4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0097543 all species →	Cellular Component	ciliary inversin compartment	Interproscan
GO:1904108 all species →	Biological Process	protein localization to ciliary inversin compartment	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene05517.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.