Gene detail

Detailed information of gene05573.t1 in Actinoscyphia liui

Genomic Location: chr2:24077273...24081768
NR annotation: XP_020915010.1, alkylated DNA repair protein alkB homolog 8 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene05573.t1

ATGGCGGCGCGAAGTTGCATGAAATTGTGTGGAGAAAAGCTTACAAAATCCGAGAAAAGAGCTCTCCGTAAACAGAGATGTAAGATGTATTCAATGCAGAAACATAATACAGAACTGGAAATATCTGAGGAACCAACATCGCACGTACTAGTTGGCAATGGTGGATTGATGAATGGTATTGATCGCACACAAATCATGGGACTGTTTAAAACTTTTGGTATTCTTGAGCGAGTTATAATGGTGCCACAGCAATCGTATTCCTTTGTGTCCTTCAAAAACGTTGACGATGCTAAGAAAGCCATGAGTGACATCAGTGGGAAAAAGCTTGATCCGTTTGTAGAATTTAGTAAAACGGGAGTAATTTTGTATTTGTCTTTCCTAAAACACGTCCCAGATGACGTCACAGGACCTATAAGGGATAGACCCCCCGGACTTGTATTGATAGAAAATTTTATTGATGAAGAAGAAGAGCAAGAGTTGTTGAAGGCCTTTAGGTGGGATGATGAGAAAGGAGACAGTGGCTTGACTGATCAAGCAGCTCAAAAGCAATTGAAACACAGAAGAGTTAAACATTTTGGTTATGAGTTTCTCTATGGAACAAATAACATTGATACAACAAAACCACTTCCTGGGGGGATCCCTGAGGTTTGTAATGGTGTCATACATCACATGACGTCAAGTGGCCATATTAAGAGCATACCTGACCAGTTAACAGTGAATGAATACACCCCAGGACAAGGCATACCACCTCATGTGGATACACATTCTGCTTTTGAAGATGGAATCATTTCAATCAGTCTTGGAGCCAAGATCACCATGGAATTCCGTCATCCAGATGGACGACACATCTCTGTGTTACTGCCAAGAAAGAGTTTGTTGATAATGACTGGTGAAAGTAGATACCAGTGGACCCATGGTATTACTCCACGCAAATTTGATATAACTAATGAAGATCCCCAACCACTGGAAAGCAGTCCTGATGATACAGAAAATAATGACGCTAACAGCTTGTCAACTGGAGTTACCCAGTATGAACGAGAAACACGAATATCTTTAACATTTCGTAAAGTCAAACATGGTCCTTGCAAGTGCAACTTTCCTAAACTGTGTGACTCTCAAAACTACAACGAGAACTCTTCCCCTGACTCCAGCACATACACTCTTCCTACAACCCAACAAGATGCTGAGAGACTGGAATCTACTCATGTTCATGACGTTTATGAGCAGATTGCTGATCACTTCAGTGACACGCGGCATTCACCTTGGCCTAAGATAGCCAAGTTTTTATGTGACATCCCAAAGGGTAGCTTGGTAGCTGATGTTGGTTGTGGTAATGGAAAATACCTTGGAATAAATGACAACATTTTCAAGACAGGCTCGGATCGAAGCTTCAATCTCGCTGCGATTGCAAAAGAGAGAGGGCATTCTGTCATTGTCTGTGATGTGTTAAACCTTCCCTACAGGTCTGAGGCATTTGACGTGTGCATATGCATCGCCGTTCTTCATCATCTATCAACGACCGAGCGCAGATTCGAGGGTCTAAGAGAACTGGTACGAATCGTGAGACCGGGTGGAATGGTACTAGTGTATGTTTGGGCGTTGGAGCAGAAGCTCGAAAAGATCAAGAAATCAGAGTTGAAGGAGGTGGAGTTCAATGCGCGACGAAGTGAGATGAGTGGAAACAGTTCTGGACCTTCTTTGATCACAAACGATGTCACGGAATCAAACTTCGAAAATAAAGTTGTCAACAATTCAGATTTTGCGGTGGAGACTCAAAAAGTACAAATTAATGCGAAAAGAGAGGTTTTTGAGCAGCAGGATTTGTTTGTCCCGTGGAAATTCCGTGGTGGAGGAAAAGACAAAAAGGAACGCATTCAAATTGAAAAGAACGAAGAAAGCAAAAGTGATGATGGTGTCGATCCCGCCGCAACCAATGTATTTCACCGATTTTACCACGTGTTTAGACAGGGGGAATTGTTAGACTTATGCAGTCGTCTTGGCAACGTGGTTGCTAAGGACGCGTATTATGATAGGGGGAATTGGTGTGTTGTGTTAGAGAAGACAGATCAGTAG

Transcript

gene05573.t1

TTCCAAGATGGCGGCGCGAAGTTGCATGAAATTGTGTGGAGAAAAGCTTACAAAATCCGAGAAAAGAGCTCTCCGTAAACAGAGATGTAAGATGTATTCAATGCAGAAACATAATACAGAACTGGAAATATCTGAGGAACCAACATCGCACGTACTAGTTGGCAATGGTGGATTGATGAATGGTATTGATCGCACACAAATCATGGGACTGTTTAAAACTTTTGGTATTCTTGAGCGAGTTATAATGGTGCCACAGCAATCGTATTCCTTTGTGTCCTTCAAAAACGTTGACGATGCTAAGAAAGCCATGAGTGACATCAGTGGGAAAAAGCTTGATCCGTTTGTAGAATTTAGTAAAACGGGAGTAATTTTGTATTTGTCTTTCCTAAAACACGTCCCAGATGACGTCACAGGACCTATAAGGGATAGACCCCCCGGACTTGTATTGATAGAAAATTTTATTGATGAAGAAGAAGAGCAAGAGTTGTTGAAGGCCTTTAGGTGGGATGATGAGAAAGGAGACAGTGGCTTGACTGATCAAGCAGCTCAAAAGCAATTGAAACACAGAAGAGTTAAACATTTTGGTTATGAGTTTCTCTATGGAACAAATAACATTGATACAACAAAACCACTTCCTGGGGGGATCCCTGAGGTTTGTAATGGTGTCATACATCACATGACGTCAAGTGGCCATATTAAGAGCATACCTGACCAGTTAACAGTGAATGAATACACCCCAGGACAAGGCATACCACCTCATGTGGATACACATTCTGCTTTTGAAGATGGAATCATTTCAATCAGTCTTGGAGCCAAGATCACCATGGAATTCCGTCATCCAGATGGACGACACATCTCTGTGTTACTGCCAAGAAAGAGTTTGTTGATAATGACTGGTGAAAGTAGATACCAGTGGACCCATGGTATTACTCCACGCAAATTTGATATAACTAATGAAGATCCCCAACCACTGGAAAGCAGTCCTGATGATACAGAAAATAATGACGCTAACAGCTTGTCAACTGGAGTTACCCAGTATGAACGAGAAACACGAATATCTTTAACATTTCGTAAAGTCAAACATGGTCCTTGCAAGTGCAACTTTCCTAAACTGTGTGACTCTCAAAACTACAACGAGAACTCTTCCCCTGACTCCAGCACATACACTCTTCCTACAACCCAACAAGATGCTGAGAGACTGGAATCTACTCATGTTCATGACGTTTATGAGCAGATTGCTGATCACTTCAGTGACACGCGGCATTCACCTTGGCCTAAGATAGCCAAGTTTTTATGTGACATCCCAAAGGGTAGCTTGGTAGCTGATGTTGGTTGTGGTAATGGAAAATACCTTGGAATAAATGACAACATTTTCAAGACAGGCTCGGATCGAAGCTTCAATCTCGCTGCGATTGCAAAAGAGAGAGGGCATTCTGTCATTGTCTGTGATGTGTTAAACCTTCCCTACAGGTCTGAGGCATTTGACGTGTGCATATGCATCGCCGTTCTTCATCATCTATCAACGACCGAGCGCAGATTCGAGGGTCTAAGAGAACTGGTACGAATCGTGAGACCGGGTGGAATGGTACTAGTGTATGTTTGGGCGTTGGAGCAGAAGCTCGAAAAGATCAAGAAATCAGAGTTGAAGGAGGTGGAGTTCAATGCGCGACGAAGTGAGATGAGTGGAAACAGTTCTGGACCTTCTTTGATCACAAACGATGTCACGGAATCAAACTTCGAAAATAAAGTTGTCAACAATTCAGATTTTGCGGTGGAGACTCAAAAAGTACAAATTAATGCGAAAAGAGAGGTTTTTGAGCAGCAGGATTTGTTTGTCCCGTGGAAATTCCGTGGTGGAGGAAAAGACAAAAAGGAACGCATTCAAATTGAAAAGAACGAAGAAAGCAAAAGTGATGATGGTGTCGATCCCGCCGCAACCAATGTATTTCACCGATTTTACCACGTGTTTAGACAGGGGGAATTGTTAGACTTATGCAGTCGTCTTGGCAACGTGGTTGCTAAGGACGCGTATTATGATAGGGGGAATTGGTGTGTTGTGTTAGAGAAGACAGATCAGTAGCAACCACTAGTCTCAATAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07G10	tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkbh8 OS=Xenopus tropicalis OX=8364 GN=alkbh8 PE=2 SV=2
Q95K79	tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8 OS=Macaca fascicularis OX=9541 GN=ALKBH8 PE=2 SV=1
Q80Y20	tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8 OS=Mus musculus OX=10090 GN=Alkbh8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001964 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13532 all species →	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027450 all species →	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR037151 all species →	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034256 all species →	Domain	ALKBH8, RNA recognition motif	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR051422 all species →	Family	AlkB Family tRNA Methyltransferase/Dioxygenase	Interproscan
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13069 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0106335 all species →	Molecular Function	tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10770	ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8	EC:1.14.11.- EC:2.1.1.229	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.