Gene detail

Detailed information of gene05902.t1 in Actinoscyphia liui

Genomic Location: chr2:28227626...28240764
NR annotation: XP_020899678.1, sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene05902.t1

ATGGTGATAGTTCTGACTGGATATTACCAGACTAGTTCACGTGTAGAGATCCGTTTAGTTGGTGACGGTGGACGGACATCAGCGCATGACCTTCGTCCATGGGGAGGTACATTTAAAAGGAACAGTAAAAACAGATTTACTATAAATGACGGTGATGTTGGGAAACTAAAGACTGTTGAGCTCTATCTCCACTCTGGCTCTCAATGGTCCGTTACCAAGGTTATAGTTATAAGTGGAGGTGTATCTGTGTTTCTATATTATAAGGAAATTAAACCTGGAAGCTGGACCAGTATCAACTCTAAATGTCCTCGTGGATATCAAAAAGGACCCAGTGGGACTTGTATAGACATTGATGAATGCAGAAAGAATCCATGTAAAGGTCCTTTAGTAAAGTGTCAGAACACTTTTGGTTCCTATCGCTGCGAATGTCCTCGTGGTTATCGTGTTCGTTTTGAACAATCTTGCGAAGACATCGATGAGTGTCTGGAAATAAAACCGTGGCTGTGTGATCAGAAGTGCGAAAATACCCCAGGCTCCTACCAATGTTATTGTAAGCGTGGTTACAAATTTAAGGAAGGAAAATGCTTTGATATAAACGAATGCCAAGATGGATCTCATCACTGCGACAGCGAGTCCACTTACTGTGAAAATAAGGAGGGATATTTCAGTTGTAAATGTAAAGCTGGGTACAAGAAATTCAACGTTACGCATTGTCAAGCAATGTACTGCAGTAGTTTCACAGCTGACAAGAAGACAACTTACACTCCACCACGATGCACAAAGAACAACGCAAATCGATACAAAGATATCTGCACAAGAGGATGTACCTATGGGTACGAGCTGAAAGACGATCCCTCGTTAAAAACGTTAACTTGCATTATAGAAGGGGCAGGTGTCAGTGTCAAATGGAAAGGAAAGTTTTACAGCCCGCCGAACTATTGCATTGGCGTAAAATGCCCTGCACTGCCAGCTATCGCAAATGGTAGATATCCCTCTCGTAGTTGTGGAATAACCGGTGGGCAGCACGGAGGCCATGTGTGTTATTTCCTATGTAACACAGGATACTTGTCTGTTGGAACAACAACATTTCATTGTCAGGCAAACGGTACATGGGATGGTGTGCCAGGGAAGTGCAAGAAAGTTTACCCAACACCATGGATCACATGTCCTTCAAACATAATCAAATCTCTTCCTCCCGGGAAAAGCTCACTCTCTGTTGGATCGGACTGGAAACTTCCTCAATCTAACTACAAGAACATTGCTGCTTCACCGTCTGGTGTTAATGGTCGCTACCAGTTTCCCGCAGGTAAAACCAAAATCACGTGGACTGTAACAAACGCAGAAGGAAAAACCGCTTCGTGTTCAAACTACGTCGACATTCAAGACAAAGAACCACCAAAAATAACGTATTGCCCAGGACCTAAAGTGTTTTACCCTGCCTACTCCAATCCGCCTTACTTTGTGAAATACAAGGAACCAAAGTTTACAGACAATGTTGGCGTGGTGAAGATTAAGCCACCGTACAGTGGAGGAACGAGCATTTCTTATAAAGGAGGCACGAATCTATTTGTGAAGGCAATCGACAAGACAGGCAATGAAGTACAATGTGCGTTCACAGTTTACACCGGAGGGTCAAAATGCTCTTTGCAACCTGACGATCAAGGATACCCTGGAACGTGGAATCTTGGGTCACATCAAGGGATACCAATTGCTACTAGAGTGTGTCCTATCGGTACAAGTGTTGCTGGTATACATAGTACTTGGGGTATGTGGTATTGTACAAAGTCTATTGGAAAATGGGAACCAGCTAAAGTAGATGACTGTGTTGTCTTTACAAGCGCCAATAAAACATCGCAATGTACAGATGGATATGAAAAGACATTCAGGAGGAATGTCTACAAGTGCATGCAGTGTCCTCTGGGAACCTTTTACCTAAAGAACGCGACTGGCAAAGGGGCCTGCGCTGAGTGCCCTGCAGGGACCTTTCAGAACAATAGGGGAAGTACCACTTGTAATAAGTGCCCTGTAGGGACATATTCTCTTAAAGGAGATTACAAGTGCAGAGACCTGTGCCCTCGTGGTACCTTTTCACAAGACAGCATGAGGCCTTTCTGTTCGCTTTGTCCTCAAGGTCAATACCAGCCTAAAGAAGGTCAAACGAGCTGCTTAAATTGTGCTGCAAACAAATTTACAAACACTAAACTTGGATCATTTTCCTGTCAAGATTCGAAGCCTAGCAATCCCCAAAACGGCGTACTTGTGATCAGTTCTATCGTGAAACCCAAGGCATGGAATACTGACAGCAAGGGTAATACCACACTAGAGTGTTACATCAACGACAACAACTACAAACCTGTGTCTGTACAGTGGAAAGTGGATAACAAGGGAATTCCAGACGATTTCATTGGCAAATCGAAGTTTGAAGAAATAAGGAATGCCGCTGGTAAGCCTGTGGGCGCACGTGTGATCGTTACCAAGGCAACGCAGCATAATGCTGATGTAGACTACGCTTGTGTAGCGGCGAATCCTAACGGAGAAACACGCAAAACCGTGAAGATGCCATACATATGA

Transcript

gene05902.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000992 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF02494 all species →	HYR	HYR domain	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR052080 all species →	Family	von Willebrand factor C/EGF & Fibrillin	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47333 all species →	VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene05902.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.