Gene detail

Detailed information of gene05910.t1 in Actinoscyphia liui

Genomic Location: chr2:28311795...28318824
NR annotation: XP_020917715.1, dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene05910.t1

ATGAATCGTGCATCTCGAATCCCAGTCATGTTGGCTGTTTTCTTCCTTGTTAGTTTAACCCTGGCAAACGCCGATGTTAACCCAAATCTTATTTATAGCAAAGTTTCCCGTAAAATAGATCTTGCATCTCAACAAGCCAAAGTTTCTACTACGATCACTTTGGAAAATGCCGGCGACAAACCTACCGGGTTTTTTCATTATGCCATGGATCCTTCACTATCGGACAAAGTAGCATTTATCTCAGCTTCGGCCAAGCCTGAAAACGACGACGAAGATGCTAAGCTTACTCTCAAAGAAGAAGTTCTCCCTGCACACAGGGATCTGAAAGTCCTCCGTGTTAGCTTGCCTCTCCAACTAGCCCCTGGTAAGACCATCGATGTTCAGGTAGAAGAAGTCTTCACCCACAGCATGAAGCCCTTTCCTTCCAAGGTCAGCCAGTCTGAGAAACAACAAGTCCTCTTCACTGGCAACCACTATGTTTTCTCACTTTACAAGACCAAGAAACAGACTACGACTGTCGCTCTTGGCTCGTCAGTAGTGGAGTCTTTCAGCAAACTCAAACCATCCGCCCATTCTGACAGCACGATAACCTATGGTCCTTACACTGACGTTGATGCTTTAAAACAGAGTACTATGACAATCCACTTTGAAAACAACTCTCCATTCTTAGTGGTTATTGATATGCTTCGTCTCATTGAAGTGTCTCACTGGGGAAACATTGCTGTCGAAGAATCATTCCATTTGAGGCATTTAGGAGCTGAGCTGAAGGGTTCATTCTCGAGATATGATTACCAACGTACCCCTGCACCAACCTCCATCAAGTCCTTCAAGGCAGTCCTTCCTGCTTCTGCATCAGATGTTTATTATCGTGATGAGATTGGTAACATTTCAACCAGTAACCTGCTTGTACAACATGACTCAGTTGAGGTAGAGCTCAAGCCAAGGTTCCCTCTCTTTGGTGGGTGGCAGACGCGTTACTACATGGGATATAATGTACCAAGTTATGAATATCTGTATAACTTAGGTAACAACTATGCTCTAAAGATGAGATTTGTAGACCATGTGTTTGATGATTTTGTCATTGATCAAGTAACCGTGAAAATTATTCTGCCTGAAGGAAGCAAGGATATCAGACTCAAGACTCCATTTAAAGTTGAAGAGCGGGAGCGTGAGCAGCACTATACGTACCTTGATACTATAGGAAGACCTGTTATCATTGCACACAAGAAGAACCTTGTAGAACAACACATACAGGAATTTGAGATTCACTATGTATTCAACAAAGTGATGCTTCTACAAGAACCCATTTTGGTTGTTGGTGCATTCTACTTGTTGTTCCTTCTTGTTATCATCTATGTCCGCATGGATTTCTCTATCAGCAAGGATGAAGCCAGTGAGTCTAGGATGCGTGCTGCTGGTCTTGTAGAAGAAGTTTTGCGCCTGCTAGATCGCCGCAGTGGTTTGTACAATGTGTACATGGATGCCATCAGCAAGTATAAGTCAGGCAAGGATGCCACAGGCTTTGCCAATGCACGCAAGAAGCTGGATGCTGACTATCGCTCTATTGGAAACCAGATAACCCAACTGCAGAATGGTTTGACCAAAGAACAATCGGAAGCTGTGGATAAGATTGGTGAAATCCAACGCAAGGAACACGAGCGCAAGCAACTTCTAGACCAAGCAATTGCCATGGCTGAGAAAGTTGTAAGTGGACGCATGAACAAGCAGACGTATGTGGACAATGAAAATACCAACAAGGCCAAACGAGAGAAGTTGAGCTCTGAAATCAAGGCGATTGCCGAAACTCTGTAACCTTTTCAAACTTAGGATCACATCAAGCTTACATCTTACCATCTAGGTTTTTGTTTCTCTAATGTACTAATCAATAAATACTACTTTAAAATATACAGCAAACTATGAGTTGGCTACAATATAGATTGTGACTACAGAATGTATTACATACACAAGAGACTAGAAAGAAGCATTTTTGTATTGTTTAACAAGAGTTTTGATGGTACGGATGCAGTATTTGATGTTGTGTGACTGTCGTTGTGTGATAGGATATATAGTTGTCATCCAGCCAACATCTAGGTGTATGTTTATTAAAAATATTATAATTTTTTATTGCCAACATCTCCAAAGAAGGGGGCATCAATGAAGTGTACTTTCATGTACTTCTTCACCAATAAAGACAAATGTTACTAAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91YQ5	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus OX=10090 GN=Rpn1 PE=1 SV=1
Q4R4T0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis OX=9541 GN=RPN1 PE=2 SV=1
E2RQ08	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Canis lupus familiaris OX=9615 GN=RPN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006390 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04597 all species →	Ribophorin_I	Ribophorin I	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007676 all species →	Family	Ribophorin I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21049 all species →	RIBOPHORIN I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0018279 all species →	Biological Process	protein N-linked glycosylation via asparagine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12666	RPN1, OST1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 1 (ribophorin I)	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.