Detailed information of gene05992.t1 in Actinoscyphia liui

Genomic Location: chr2:29259037...29270162
NR annotation: XP_020917533.1, protein dachsous [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q24292Protein dachsous OS=Drosophila melanogaster OX=7227 GN=ds PE=1 SV=3
Q2PZL6Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
E9PVD3Protocadherin-16 OS=Mus musculus OX=10090 GN=Dchs1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000235 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028
all species →		CadherinCadherin domainDomainInterproscan
PF01049
all species →		CADH_Y-type_LIRCadherin, Y-type LIR-motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002126
all species →		DomainCadherin-likeInterproscan
IPR015919
all species →		Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894
all species →		Conserved_siteCadherin conserved siteInterproscan
IPR027397
all species →		Homologous_superfamilyCatenin binding domain superfamilyInterproscan
IPR000233
all species →		DomainCadherin, Y-type LIR-motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24026
all species →		FAT ATYPICAL CADHERIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene05992.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP