Detailed information of gene06015.t2 in Actinoscyphia liui

Genomic Location: chr2:29446482...29448788
NR annotation: KXJ22419.1, Histone deacetylase complex subunit SAP30L [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NYV5Histone deacetylase complex subunit SAP30L OS=Danio rerio OX=7955 GN=sap30l PE=1 SV=1
Q9HAJ7Histone deacetylase complex subunit SAP30L OS=Homo sapiens OX=9606 GN=SAP30L PE=1 SV=1
A4FVD8Histone deacetylase complex subunit SAP30L-A OS=Xenopus laevis OX=8355 GN=sap30l-a PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008082 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13866
all species →		zf-SAP30SAP30 zinc-fingerDomainInterproscan
PF13867
all species →		SAP30_Sin3_bdgSin3 binding region of histone deacetylase complex subunit SAP30FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025717
all species →		DomainHistone deacetylase complex subunit SAP30 zinc-fingerInterproscan
IPR024145
all species →		FamilyHistone deacetylase complex subunit SAP30/SAP30-likeInterproscan
IPR025718
all species →		DomainHistone deacetylase complex subunit SAP30, Sin3 binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13286
all species →		SAP30Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000118
all species →		Cellular Componenthistone deacetylase complexInterproscan
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19202SAP30; histone deacetylase complex subunit SAP30-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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