Gene detail

Detailed information of gene06061.t1 in Actinoscyphia liui

Genomic Location: chr2:29873803...29884615
NR annotation: XP_020911672.1, probable protein phosphatase 2C T23F11.1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene06061.t1

GCGTACAGTAGTGTGTGTGTATGGAGTAGTCCTTTCGTCATGTTTACATGAAAATTCCCGGACTATTCCTCTCGTCTGTTATCATTTACGAGTAGGCCAGGGTCTGCTAGTGACTCAAGCTTGAAATAAAGACCCTTTTTGCGCTTTCTAAACCGTCACAAGAATGGGCCAGACACTCTCAGAACCTGTTACTACCAAGGAAACATCGTCATGTGGCAACAAACAATTCAAAGTAGGCTCATCTTGTATGCAAGGCTGGAGAATAAACATGGAAGATGCCCACACAGAGATTTTGTCACTGAGAGAAGACAAAAGTGCTGCCTTCTTTGGTGTTTATGATGGACATGGAGGTGCAAGAGTTGCACAATATGTTGGAAAGCACTTGCAGCATAAAGTTCTCTCACAACCAGCCTGGAGTAAAGGAAATGTGGCAGAAGCCCTCAGAAATGGATTTCTTTCTTGTGATGTTGATATGCTCAAAGATGATCAAATGAAAGATGAGATGGCTGGAACCACAGCAAATGTTGTAATAATAAAGAACAATAAGATATATTGTGCAAATGTTGGTGACTCCCGTTCCATAGCCAGTAGAAAGGGAGTAGTTGAAAATCTATCATATGATCACAAACCCAGCAATGAAGAAGAAACCAGAAGAATAATAGCTGCTGGAGGATGGGTGGAGTTCAACAGAGTTAATGGTAATCTTGCCTTGTCAAGAGCTCTGGGTGATTTCTGTTTCAAAAAGAATGATAAAAAGTCTGCAGAAGAGCAGATTGTTACAGCAATGCCTGATGTGATCATCAAGGAGTTAATACTAGACCATGAGTTTATAATACTAGCATGTGATGGTATTTGGGATGTATTATCCAACCAAGAAGTAATTGATTTTGTTAGGTCAAGAATAGCACAACACATGGAACCAGAGCAGATATGTGAAGAGTTATTAACCCGCTGTCTAGCCCCCGACTGTCAGATGGGTGGCCTAGGATGCGACAACATGACGGTCATTCTTATTTGTCTTGTAAATGGACAGACATACGAAGAACTGTGTGAAAAATGTACCCTACCAAGTGAAGCTCATCAACGTCCTGTCAATGGGAAGGAAAGTGGATTTTATTGATAGAAACATGTAGTTGTTATTGACTTAGTATTAGATGTGAGTGTTGTATAATGGGTGGTTACTGTACCAGTTCTAGCAGTCTACATCAGGGCCCAGTTCCTAGAAGGCCGATTATCCAGCGTTATCATCAATACACACAGCCAAATATCAAACTGCCCTCCCGAGAACTGACAGCTATTGGGCCGATAATGAACTGTGGGCCGCAAATGGCTTACCGCCCACCGAATGTTTCAATAAAGTTTAAGCCTATAGAATTTCATCAGTTGTCTTATAATTTGGCCTTGTATATTGATGATAATGGCGTTGGGGCGTAAATGGTACTACGCGGGCCACAAATAAACGATATGCCCTCCATAAGTCATGTTATTGTCCTATTAAAATGAATGGTTTTCTTAAGGTTTAATCCTCATTTAGTGCTAATCAACCTTCCAGGAATTCAGCCCAGGGCCGGTTGTACGAAGGTTGGATAAAGTTATCCACCGGATAAGAGTTATCCACTGTATAGAGATAACCTGAATTTTTCACAATTCTGCACGTTCAAACAAGGTCAGGGTAAAAGATATTAGGACAGCATTGTGAATATGATAAAGGTGAAATTTCAACTGTCAATATTGACAGAATTCAACTAAATTCAAGGGAAAATAAGTGTATTCATCACAAATTCTAATGTAAATGGGTACGAAAGACTGCAAAGAAAATTTCTGAAGTTAGCTACTTATAATTCATGGAAACTAGCGAGTAAACTAGTATGGATAACTTATAATAACTAATAATAACTTATAATTCATTACAATAATAAATGTAATTCTTTTTAAAAAATGTGATCAATCCCTTGATCATAGTCAATCATTTCTTAATATTTTTACCCTTACCTCATTTGTGCATGCAGAATCGTGCAGAATTCTGGGTATCTCTAGGAAGGAGTACAGTAACACTGTTCCAACCACTAGCCCTAAATCCCAACATCCACGGTGATTGTCATCAATACTGTTTCTATGGGATGGTTTCTTTTGATGTGATATTGTGTTTGGAGAAGTGTGTTGTGTTGTGTGTTTAGCTTTGTAGCTTCCAATGTAGCACCAAGTGCTGAATGATTTAAAGCCCTAGAGTTTTGTTCTGTGAGAGCACAACACTCAGGGTCTCTGTATGGCTACCATGAATATATGAACTTTATTACAGTAACGACTAACACTAATATATATGTATAGAACGTGTTGCTTTACAGAATTGTTTTACAGTCAAAGAAATGAAATTTTGGTCACAGAGATTCTGACATGGTATAATATTTGTTTTTCATGTTTACCTTGTTGGGTATCATTCAAACTGGCCATGTATAGCCTTACCCACCCTACCCCCTGTGGGTAAAGCAGGGAAGGGGAGGGGTAGGTAATGGCTGTACATCATCATGTCAAGTCTACTCGGACAATGGCTGTACAGACTACATTACAATGTCATTCCTATTGTTGATATATGCTTTCTCTTGATTGTACTGAATTATTGTAAGGTAGATAACTACAAACAGCCATATGTGAACCAGCTTTGTGCATTACATCCTCAGGAACAACACTGTTTAAATGTTCCTGCCAGGGAAACAGGCTGCTGTACCCCTCCCATCCCCCCCCTGAGCCTGCCCCTACTCCATCGGTAACTGAGGATGTGATTTATGTGCTGCTATTTCAACAGGCCAACTGTAAATGATTGTACAAATTGACATTCTTTTTATTCTTTTAACTTCCTCACCAAATGTGGGTTTTGAAGCTTTGAGCAGGTGTGAGAATCTTTCCTGTGTGAAAATCATTTTAAACGGAGTATTTCTTTTCTTTCAAAAATAATAATAATTAGAACCCCACTGCCATTTTATCGCTTTTTCATTTTAAGCCTGGTGTTGTGTGGGGATGTTTAGGTTTTTGATAGATTTTTGTACTACAAAGAATGAGGTAATGTCCGTAGAGTTACTGCATACGTATTTCGCCAAAAGATTCCAATGCTGTTGTCAGTAATTTTTTGAAAATAAATTATGTAGTAATATACGTGAGTAGTAACTATCAGTTGTATGTGTATGTATGTAGTAATTATTGTCTAATATTTATATACAATCAAGTGTTTAAACCAAAACTTCTCTTGTTGTCATCATTTCTATCCCTTGCTCATCTTGCAGACCTATTTTCAACTATCACTGTTGAAAAAATATTAAACATTTCATCTACTTTTTGCGTTTGCAATAGAAACGTAGAAGAAGCGTTTATTATAAATTTCTTTCAAGAATAAAACCTATGTGAGAGTTATCGGCCTGAAGAAAGGGGTTCGAAAAGAGCAAAGAAAACCATGCCAATGTAATAATTATTTTTACATTGGCAAGGTTTTCTATGTTCTTTTCGGTTGAATATATCGCATATATTCATTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49596	Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans OX=6239 GN=ppm-2 PE=3 SV=2
Q09172	Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ptc2 PE=1 SV=1
A0A7U2MSD6	Protein phosphatase 2C homolog 2 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=ptc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481 all species →	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR000222 all species →	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR015655 all species →	Family	Protein phosphatase 2C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13832 all species →	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043169 all species →	Molecular Function	cation binding	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14803	PTC2_3; protein phosphatase PTC2/3	EC:3.1.3.16	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.