Gene detail

Detailed information of gene06070.t1 in Actinoscyphia liui

Genomic Location: chr2:29940953...29945374
NR annotation: XP_020911744.1, ribosomal RNA-processing protein 8 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene06070.t1

ATGTTTGAAGTAGATACTTGGGAGACGAGCGGAAATGGGGAGGAAAAGTTACTACAAGGTCTATTTGGAGATCATTCTAAACGAAAACGCAAAAGACAACAGCATAAAACTTTGCCCAATGAGGGAAAAGACAAGGACAATTTCTCAAAGTCTTCAACCAAATCAGATGATACTTCAAAGGAAGACAGTTCAATTCAAATCCATAACAAAGGAAAAGTGATGAAGAAGCGGAAAAGTTCCCATTTGGTAAAAGAAGATGAAACAGCACAGACCCCAAAACATGATGAGACTGCAATGACCAATGCAAGAAAAAGAAGGAAAAGAAAGAAAGACAAAGGAATAACCTTAGTTAATAAAGAAGGTTTGCAACAAAATGTTAAAACAGAAGTGGATGAGAAAAAGCAAGGAAAAAAGAAGAAAAAGAAGAAAAAAACAACACATGTGTTAAATGATAATCTTAGTAACATTGATACATGTACATCACATACATCTCCTGAAAAAGTCAATTTGAATGATAAAAATAGAGAAATACCTTTAAAAACCGAAAAATATGAGAAATGTATTAATAAAGATTCAACAAAGATATCATCAGTAGTACCAGGTCAACAATCTCCAAACAAAGGAGGAGAAAGTTTACCAAGAGCTGCTAAATCCAGAAAGTCTCAATTACAAGAGAAACTGAAGCAAAAGCTGGAGTCGTCAAGATTCCGTTGGATAAACGAACAGTTGTACACAATACCAGGTGAAAAAGCAATGGAGATGTTTCAAGAAGACCAGTCGTTGTTTGATGTTTATCATCAAGGATTTAGGAGACAAGTAGAACGGTGGCCTGTCAACCCAGTTGATGTTATTATTGACTGGATAAAACAAAGGTCGTCATCAATAGTGTTAGCTGACTTTGGATGTGGAGAAGCCATCATTGCCCAATCAGTACCAAATAAGGTTCACTCGTTTGATCTGGTAGCAAAAAATAAGCTGGTGACAGCTTGTAATATGGCCAAGGTTCCATTGCAAGCAGCCTGTATTGATGTTGCCATCTATTGTCTTTCTCTAATGGGGACAGACTTAGAAGCTTTCCTGAGAGAAGCATACAGGGTGTTAAAACCAGGAGGGATATTAAAGATAGCAGAAGTTGTTAGTAGGATGGAAGTCAATACCTTTATACTTGCTGTATGTCAACTAGGATTCAAGCTGGATAACATGGATGATTCCAACAAGATGTTTGTCCTTCTTGACTTCGTAAAAGATCATCAAAACAAGAAAATTAAAGGAAAGAAAGATTTGTCATGTCTGCAGCTCAAACCATGCATGTACAAAAAACGCTGACACCAGATTATAACTGCACATTAACAATTTAATGTATATTTTAAGTAGCCAAATATGTATTTTATATACAAAATGTTTGTTGTGATTGTCGGTAGATGTAATTTCAAGCGTAGTTCAATTTATTATAGAAGGAGTGGCCATGTTGTACTAAGGTGTAAACCTTCATTTCATTACTTTTTACTAAAACTTTCAAGATTACATGTGAGTTTGGTTGAAAAATCCAAATTCACAATTATATATTCTCTCATGAATTATTAATGACTTTTTGAAGACAAATTAATGTAAAAGACAAATAGAAAATGGTTTTTATTCATACCTTTTTATTTGATTATTCCCATCACATTTGAGGTGATACATTATTTAGAGTTTTTTAAATTAATTGTACCATTGTAATATATTAAATTGTGATGTCAATATATATGGGTGAAAACTGTTTCAGTAGTTCATAAAAATACTATTCTTACAAAAGGTAGAAAGATTATAAACTAACATCCAGATAACTATAGAGTTCACGGGGAATGAGTTAACAAGTGAATTTACAGGAAAAATGTTGTTAGGGAATGAAGCCAGTATAAAAGAGTTTATTTTGTCATCAGTATTCCAGTGCTGCTTTTGCCAGTGCTGGGTAGTTAGGGGATCCATTACCAGTGACTGGGTCCCAACCCTCAGAAGCTGTAAAACCTCTATCACCAGGATCACAGCCTTCATTGTGACCAGACGTCACATCATACATTGCTGCTGTGTTCTTGTACAGGAATGGATTCAAGAATCCCATCGAAGGTTTTCCATTCTTGAATCTTAAATCGTTGAGTAGAGAGATAATACCAGCCACAGAAGGTGTAGATGCCGAGGTGCCCATCACTCCAGGAACAGGAATCAGGTTGTTTACGACCCAGAAATGGTTACAGACAGAGGCTATGTCAGGATAAGCTCTGCCACTTTTGTTAAAGTAGGTGCTTGCAGGTATATCAGGGCCAGTTTTAAGATAGTGTTCAACAGCTGTAGTCTGGTAGGATTGTTGAGAGAAGACATTACTAAAGCCGCCACCACTAATACCATATGCATACTCAGCACTGGTGGTGAATGGGTTTGAAAATGCTGTACCACCAACGGTTGTCACAAATGGAGAGGAAGCAGGGAAAGATGGTCTGAATTTCTTGTTGCCAATACAATTTGCACCATCATCACCACTTGCGAATAGAATGGACAAACCTCTCACTCCAGCCTTCTGGAACTCTGTGCTGATTCTTTGCATGTAATCTACAGAAAGGGAATCTTCATTGTCTCCATAACTTACACTATGAACCCAGGGGATTTGGCTCATGTTGCTAAGGGCAACCATCCATTCAAGAAAAGGCTCCTGTTTTTCATGTTTACCACCAGTACTCCAAAACCAGGTTGTAATGTTAGCTCCAGTGCTCATAATGTACTGGGTGTCTAGGCTTGCTTCAATTCCTGACCGACCACTGTCTGGTCCAATCACCTTAGCGATACCAGCGAGATGCGTAAAGGAAGATCCAAAGAGTTTGAAAAACTCAGATAAATCTCCAGGGTGGTAGTATTGTTCAAGGAATTGTGCAACTACTTGACTATTGTTGGGATGTGAGCCAACAGTGTCAGATATATTGTAGCGTTCTCTCAGAACAGAAGGGTAGACGCCTATATGAATACCATAGTCTGACTCATTCCTAGCCACTCTAGGCCTGGCCCAATTTACAGCTGGTAATCTCAAGATCCCTCCCACAAAGTCAAGGTGTTGTGCAACTTTACTGGGTACAGAGTAATGTTGTATAGATCTGATACTTGGTTTAGACAGCTTCTCATGGTTAAAGTAGTAAAACTTGGCTCCAGGCAGCAATGCTTCGGCAATCTCACACGACATTTCACAAGTCAAGAAATCCTCAGTAGTTATTGACGTGCATTTCTTCAGCTCCACTCTGTTGTCAGCAAGCCAAGACTTGACGATCTCCTGGGTTCTCTTTGATGGTGCAACAAGACTTGCTACTTCATGAAGTGAGAGGTGTTTTCCATAATCTTCAGAATCGGGATCAGATACTCTCCAAAAGAGCTTCTCCAGTGCGAGTAAGTTGCGCTGTTTTAGGGCGAAGGTGAGTTTGAGTGTTGTGTGGGGTCCAACGCGTTCGTTTAGCACCCAGCCTTCATCTTTCCATGCTAAGATGTTGTGGTCTCTCTCAAGCTTCACGAAGCCTCTAGGGAGAGCATTGATGGAAACTATGAACAGAGATATAACGAAAAACACGTTCTTACAAGCCATGTTGCATGTAAACTGTCGGTGAATGCCGCGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q84JC0	Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1
O43159	Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2
Q5U4F0	Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007484 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05148 all species →	Methyltransf_8	Hypothetical methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007823 all species →	Family	Ribosomal RNA processing protein 8	Interproscan
IPR042036 all species →	Homologous_superfamily	Ribosomal RNA-processing protein 8, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12787 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000183 all species →	Biological Process	rDNA heterochromatin formation	Interproscan
GO:0005677 all species →	Cellular Component	chromatin silencing complex	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0033553 all species →	Cellular Component	rDNA heterochromatin	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0042149 all species →	Biological Process	cellular response to glucose starvation	Interproscan
GO:0046015 all species →	Biological Process	regulation of transcription by glucose	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14850	RRP8; ribosomal RNA-processing protein 8	EC:2.1.1.287	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.