Gene detail

Detailed information of gene06119.t2 in Actinoscyphia liui

Genomic Location: chr2:30430052...30453022
NR annotation: XP_028514684.1, serine/threonine-protein kinase A-Raf [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene06119.t2

ATGGCGGTGGCGAACTCTCACCGTGAACCGACTTATCTGCTTGACAGCCATCATAACGAAGATATTTCCAACAACCACGAGTCCGAGGTTAGAACTGTACAACATGTCATAAGGCTCACAAAAGAGAATATAGAACAGCTAAATGCCCAGTTTTCCAACATCCAGCACCCTCCGTCTATCATTCTAGAGGAATTCAACGAACTGACATGTAAACTGTCTGAACTCGAAACTCGCGAAAAACAATTACTGGATTTGAGGAATGGAGAGTCTGCTTCCACTAGCTCAAGTGCAACTCCGTCATCTTCATCTGGTCCTACTTCACCAACACTAAGCTCGCGCAACCTCTATGTCGGCGATAATCTTACATCGCCGCCATTGCGAGCTCATGTCAGAGCGTTTCTGCCCAACCATCAACGTACAATGATAAAATGTAAATCTGATGTAACGCTAAGGGAAGCATTATACAAGAGAATGAGGACAAGAGGGATCTTACCTGAAACATGTCTGATATTTCACTGTGAAACAAGGGATATCATTCCTTGGGATGCTGATCTTTTTAGTTTGGAAGGAGAAGAGATTTCAGTTGAAATGATTGATGATCTTCCAAGAACTAGTAGTGTATCTCATAATTTTATGCGAAAGACCTTTTTCACCTTAGCATTCTGTGATAAGTGTAGGCGTTTGTTGTTTATGGGTTACAGATGTCAGACATGTGGATATAAATTTCACCAGCGATGTACGGCAGACATTCCTATCATCTGTGAACAAGCAATGGCAATGGATGATAATTTCTTTTTAAGGTTTACTGAGCAGACAGACTGTTTTCTTGATAAGATAATGGAAATATGGAAGGAATTCAAATTGTTATTGTCATCTCGTAATGAATTCACTGATTCAGATGATTCATCTGATCACAAACCCATAGCAAGAGAGAGGTCTATATCAGCACCAAATGTTTGTTTTAATTCAGTGGCAGAGGAATTGTTATTCTCAGAGGGAGCCTATCCGTCAAGACAACAAGTAGCTACTATATCAGCAACAGAAGGAAGTCGAATGATGAAAAAACGTCACACTAGTGAGAGAACACACCCGCACATGTCAGACTTGTTTGATAAAAACATGTCTAATGGTATCCATGGTAATACATTACACCCTGACATGGGATTATTAGCCAATGGTAGTGCTTTTAATGAAGAACCATCCAGCAGCCCACAGAAAACTACTTCTAAACCAAGAATACGAGCTAGATCATCGCCTGATGGTGGACGACAGAGACAAAGAGCCAATTCAACAGACGACTGGGAAATCCATGAGGGTGAAGTACAGATGGGCCCTAGAATAGGTTCTGGATCGTATGGAACAGTCTACAGAGGCATTTGGCATGGAGCAGTTGCTGTTAAGACATTGAATGTATCAGACCCCACCCCTCACCAGCTGCAGGCTTTCAAGAATGAAGTATCAGTGTTACGTAAAACCCGTCACGTCAATGTATTACTGTTTATGGGCTGTATGTCCAAACCTAAGCTGGCTATTGTAACACAGTGGTGTGAAGGCTCAAGTCTTTATCGTCATCTTCATGTCACAGAAACTAAGTTTGAGGTGTTGAACCTGATAGATATAGCCAGACAGACAGCACAAGGCATGGATTATCTTCATGCCAAAAATATAATTCATAGGGATCTCAAATCTAACAACATCTTTTTACAAGAGGATTTGACAGTAAAAATAGGGGACTTTGGTTTAGCGACCATCAAGACAAGATGGAGTGGCAGCGAGTATGCAGAGCAACCATCAGGGTCTATCCTATGGATGGCTCCAGAGGTGATTCGTATGATGGAACCTAATCCATATTCATTTTATTCGGATGTATATGCCTTTGGTATTGTGATTTATGAGTTAATATCAAGCTCTCTTCCTTACCCAAATATTGGCAATAAAGATCAGATTCTCTATATGGCTGGACGTGGATATTTGAAACCAGACATGCGCAAATGTAGAAATGACATACCCAAATCATTAAAGGCTCATACCTTAGTGTGTATCAAGTTTTGTCGTGAGGAACGACCTCTTTTCCCACAGATTCTTGTAACTTTAGAGAGTATTCACAGGGCTCTTCCTAAAATACTTCGCAGTACATCGGAACCGTGGAATCTTGGAGCTAAACTCTCTGCTGATGATGTGTTTTTTGGCCCCTCTGTTCCTGAGACACCCATAAGCCCGTTTGGCAATGACTTTGCATTCTTCACTAGTGTCAATACTGGCTATTGA

Transcript

gene06119.t2

AAAACAACGAACAGATTCCATCATCTCATGAGATGAATGTTTTCAAGTGTTTTGGTTCTGAGAAGGTCGATACAGTGAGTCAGTCCAAGTCATTCCGGTTTCCGCGTTTCCACAAGAAGCGTGGAGAGTATAGTCCCCCTCAAGAACGAGCCAAAGTGTTTGGTCCAGGCTGCAGGATCATCGATGGCTGGTATTTTAGCAAGCACAGTTATCGTGCAAAGCCGCGCCGTGATTCACCAAAGGTGAGGGGTTTAATTTCCTAGTGATTTGTAGCAGCAAAAGCTGTAACGCAGCAAAACATGCAAATTGTAATATTTTGTGGATGGGGTACTTTCTGCTTGCACAAGTACCGCGGCTGGCTGATTGCTGTTCCATATCATGTGTTAAAATCACTCTAAAACCATTGTTTTGGCCATGAGTTCGTCAAAGTAAAATGGATAATTTTCGCTGTCCATACTTAAACCTTTTCATGTTTTTTATTTCGTGCGCAAGAAATTCAAACTCATAGACATCAATAGATAAATTAGTGTTATAATGTAGAGCTAGGATGGCACCGGTTAGTTTAGCAGGCTATACATCAATTAGCACAAATTGAAGAGTAGTATGCTTGACAATGAGTTTAAAATTTGTAGAGAACAAGTTTGTCACGGAAACTATTTTGACTTGCTAAATATCGTTATCTTGGCGAGTTCTTACCGGATATGGTGGATCCACCGAGATGCAGAATTACCTGCTCATTAGGCATTACAACCATTGGACTTGTTGCATAAAAACAACAACAAAAAACCGCGCACACACAAACAACAACAACAACAACGACAACAACAACAACAACAACAATAAGAACAACAAGAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAACAAGAACAACAAGAACAAGAACAAGAACAACAAGAACAACAAGAACAACAAGAACAACAACGACAACAATAAAACTGCTAGGTGTTTTTTCAAGTGAAAGATAAAAATAGTGTAACAGTAGGCATGTCGACGGAGTCCAAAGGATGAGTAGTTCAGTACCACGTGCTTGTTGTCCCTTGTGGGGTAGAGGTATGGGGATGTGATGTAGGGGGTAGGATGAGGACTTCCCGCGTGCTTATTGTCCCTTGTGGGGTAGGGGTAGGGGATGTGATGTAACAGACAATATCATGAATCAGTAGCGTGCGTGGGTGCTGTGAGACTTGATGGTCTTAGTGGGGTCTTCCTGGCTGCACGACACTAACTCATATTCTGCTCGAGTCTACTTCCGACCACAACCTTGATACATCTTGAAAAGTCGTTAACAAGCAGTCCTTGTCTTGTTGAATCGAGTTTGATTTTGTGTTCACTGGTCAGATTTTCATTTCAGACGTCAGTCGATAGATATCAGATATTGCTATCATCATGCCGGTATTATAAACACAAACGTGACAGATTAAAAGCGGTCGAACACAAATCGCTTCAGGATAAAACAAAGCTCGATCATTTGTTCTTTTGTACAGACACACTTTCCATTCAGATTGAATTGAAAGTGTTCTTGGCAGACTTCCGGTGTAGTTATCCGTGAATCACTTCCTGTAATGCGTCTGTTACCAGGACAACACTAGTAGTACCCATAGTGCTCTATGTTTCTAGGGTGGTCACGTGACCTTGTTGTGTTGCTCGTAGTCTTGCAGTGGTTCATAATGGCGGTGGCGAACTCTCACCGTGAACCGACTTATCTGCTTGACAGCCATCATAACGAAGATATTTCCAACAACCACGAGTCCGAGGTTAGAACTGTACAACATGTCATAAGGCTCACAAAAGAGAATATAGAACAGCTAAATGCCCAGTTTTCCAACATCCAGCACCCTCCGTCTATCATTCTAGAGGAATTCAACGAACTGACATGTAAACTGTCTGAACTCGAAACTCGCGAAAAACAATTACTGGATTTGAGGAATGGAGAGTCTGCTTCCACTAGCTCAAGTGCAACTCCGTCATCTTCATCTGGTCCTACTTCACCAACACTAAGCTCGCGCAACCTCTATGTCGGCGATAATCTTACATCGCCGCCATTGCGAGCTCATGTCAGAGCGTTTCTGCCCAACCATCAACGTACAATGATAAAATGTAAATCTGATGTAACGCTAAGGGAAGCATTATACAAGAGAATGAGGACAAGAGGGATCTTACCTGAAACATGTCTGATATTTCACTGTGAAACAAGGGATATCATTCCTTGGGATGCTGATCTTTTTAGTTTGGAAGGAGAAGAGATTTCAGTTGAAATGATTGATGATCTTCCAAGAACTAGTAGTGTATCTCATAATTTTATGCGAAAGACCTTTTTCACCTTAGCATTCTGTGATAAGTGTAGGCGTTTGTTGTTTATGGGTTACAGATGTCAGACATGTGGATATAAATTTCACCAGCGATGTACGGCAGACATTCCTATCATCTGTGAACAAGCAATGGCAATGGATGATAATTTCTTTTTAAGGTTTACTGAGCAGACAGACTGTTTTCTTGATAAGATAATGGAAATATGGAAGGAATTCAAATTGTTATTGTCATCTCGTAATGAATTCACTGATTCAGATGATTCATCTGATCACAAACCCATAGCAAGAGAGAGGTCTATATCAGCACCAAATGTTTGTTTTAATTCAGTGGCAGAGGAATTGTTATTCTCAGAGGGAGCCTATCCGTCAAGACAACAAGTAGCTACTATATCAGCAACAGAAGGAAGTCGAATGATGAAAAAACGTCACACTAGTGAGAGAACACACCCGCACATGTCAGACTTGTTTGATAAAAACATGTCTAATGGTATCCATGGTAATACATTACACCCTGACATGGGATTATTAGCCAATGGTAGTGCTTTTAATGAAGAACCATCCAGCAGCCCACAGAAAACTACTTCTAAACCAAGAATACGAGCTAGATCATCGCCTGATGGTGGACGACAGAGACAAAGAGCCAATTCAACAGACGACTGGGAAATCCATGAGGGTGAAGTACAGATGGGCCCTAGAATAGGTTCTGGATCGTATGGAACAGTCTACAGAGGCATTTGGCATGGAGCAGTTGCTGTTAAGACATTGAATGTATCAGACCCCACCCCTCACCAGCTGCAGGCTTTCAAGAATGAAGTATCAGTGTTACGTAAAACCCGTCACGTCAATGTATTACTGTTTATGGGCTGTATGTCCAAACCTAAGCTGGCTATTGTAACACAGTGGTGTGAAGGCTCAAGTCTTTATCGTCATCTTCATGTCACAGAAACTAAGTTTGAGGTGTTGAACCTGATAGATATAGCCAGACAGACAGCACAAGGCATGGATTATCTTCATGCCAAAAATATAATTCATAGGGATCTCAAATCTAACAACATCTTTTTACAAGAGGATTTGACAGTAAAAATAGGGGACTTTGGTTTAGCGACCATCAAGACAAGATGGAGTGGCAGCGAGTATGCAGAGCAACCATCAGGGTCTATCCTATGGATGGCTCCAGAGGTGATTCGTATGATGGAACCTAATCCATATTCATTTTATTCGGATGTATATGCCTTTGGTATTGTGATTTATGAGTTAATATCAAGCTCTCTTCCTTACCCAAATATTGGCAATAAAGATCAGATTCTCTATATGGCTGGACGTGGATATTTGAAACCAGACATGCGCAAATGTAGAAATGACATACCCAAATCATTAAAGGCTCATACCTTAGTGTGTATCAAGTTTTGTCGTGAGGAACGACCTCTTTTCCCACAGATTCTTGTAACTTTAGAGAGTATTCACAGGGCTCTTCCTAAAATACTTCGCAGTACATCGGAACCGTGGAATCTTGGAGCTAAACTCTCTGCTGATGATGTGTTTTTTGGCCCCTCTGTTCCTGAGACACCCATAAGCCCGTTTGGCAATGACTTTGCATTCTTCACTAGTGTCAATACTGGCTATTGACTGAACATACATACAAAATTCCCATTTTAAGCATTGCAATTTATACATCAATCACAAATATCACTGTATATATGCCATTACTATTGGACAAATGTCGTCATCACTGGAAGTTTGCATTAGACTTTCTGTAATGTTTATGGTCACAGCACAATATTCCTTTTGAGTCTGTCACCTGCCGTCAGTATGATATGAATTGAATGTCGCTCACCTGCCTTCAGTATGATATGAATTGAATGTCGCTCACCTGCCTTCAGTATGATATGAATTGAATGTCGCTCACCTGCCTTCAGTATGATATGAATTGAATGTCGCTCACCTGCCTTCAGTATGATATGAATTGAATGTCGCTCACCTGCCTTCAGTATGATATGAATTGAATGTCGCTCGCCTGCCGTCAGTATGATATGAATTGAATGTCACTCACCTGCCTTCAGTATGATATGAATTGAATGTCAGAATGCATGAACAAACCAACACAAATGTTCAAGCAGCACATTGCTGGCACATGGCCTTTCAATTTGTTAGCTAAAGCTGACCATAATGACAGTTGGAAGTCTAATGTAAGCATGCCAGTCATGTTTTTATTAAAGACTGGCTTTCACTAGGGACATAAACCCAAGCAACATGCAGACTGAAGGGATACAGTAATTCTCCTAATGAATTAATATGAATGAATTGCAGAACAGCCTTAGTTGTAATTTTTAGTTTATTTATTTCACTAGTCTACAGGTCTGTGTATGTTTGTGAGTCTGTGTGTATGTTTTATTTTATATGGATGAAAGTGCATGTACTGTGCTTGTGACAATATTATTGTTTAAACATTCTCACACAAGTACAACAATAGGCCATGTGTAATCTGTGAAATTCCTGTCATCTACTTTGGTAGATATTATATAGCCTTAGTCCAGCCATGTTAATTCTCTCTAGAAGCAATTTTAAAATCTAGGAGTTCTAATCAGTTGTTACCCATTAACATTGAACCCAACTAAATGTTTATAATGTAACAGCTACTGTATTTGGTAGGTGTGGTTACACAGGCATAATTACCAAGAGAGAATTACATGACTTGTCAAATTTTATAGATTAAATGTGGCCTGTCTGTGGTTTGTGGAATACACATCACATAGATGGAGTATCATTTCACTTATTCTCAAAGTGGAGAATAAAACAATAGATATCGGCCCTCTTGATAACGGGAACACTTTCAGTGCAAATATTTCCCACTGTTTTATCCTTCAGTTTAGTATAACTGAACTGGATCTATAGACTCAGATATGAAGTAATCCAATAATGCTCTTGAATAATGCTTTTTAATACTGTAACAGCACACAGCGTAGCTGTCAATTATATTATACAAGCACATTGGATCAATTTACAATTTTAGTAGCAGAATCGTTGTCTGTGTGCATTCAAATCTTTCTAATTTTTATCAGCATAGAATTGTAATTATAATTTGTATAGAATTGGTGTTAATTCCAAAAAGATGGATCAAATTTAAAACATGTTGAATGACGAATAGAATTCAGAAAAACCTCATGATTTATGGACAGGATATGTCGCTAAGGGTTGGCCAACTGACTTAATACCCCTTCTTATCAATGGATTTACTGCATAGCTGCTGTAACTAATGTCATTATGTTCTCTTATATGTTATTCAAATATTTAATAATAATAATTTAATATTTAGTTTTACTAAACCTGTAAATATCATTAGGGTAACAACATCTGTCACTATGCACACGGCAATTTGTTTTATAATGTCTTAGTGACTAAACTAGGGTGGGGTGTTTACTGTCGACGTGCTATGGCGGCAGTATTTGCTCAGGGTGGGTGTCAACAGATTAAAGATAAATTATATGCTGCATAATAACAGTGACTAAATGGCAAAAATGAAAACAATTTTCATATTAACCTGGTGTGTGTTGTCTCTCTTTATTGTTCAATGTCAGGGATGGGTTGGACCATCATGCAAGCACTTGTTTGCAATTAGGCAACATAAAGGCAAGGTTTTATGCAGAGCTCGAGACTTCTCCCAAACCCCCGAGTGTTTGCATCAGGCTATGCAAACATGGAAAAGGTATAAAATAATGCCAAGAAACGGTTACGTTATTACCATGTTTGCATAGCCTGATGCAAACATGGGTAACAGCCAATCAAATCACAGAGATTTCTAAATTATTTTATAATGTACTGAAAGGGTGTGATGACAAGTTATACTATTCAATACAGACTCTGCATCATTGTGAGAACATAGATCTGACTACAACTTTTTAGAGTAAATACTCCGATGTGATAGCCCTTATCAGACCTGGTTTCTGTAATGCTTGACTTTTCAAAGCTACCCCCAGAATTCCATGGCTATGTTTCTAGTTTCTTGTTATCAGTATTCTCTTCAACATACAACTGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15056	Serine/threonine-protein kinase B-raf OS=Homo sapiens OX=9606 GN=BRAF PE=1 SV=4
Q04982	Serine/threonine-protein kinase B-raf OS=Gallus gallus OX=9031 GN=BRAF PE=1 SV=2
P34908	Serine/threonine-protein kinase B-raf OS=Coturnix japonica OX=93934 GN=BRAF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003986 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF02196 all species →	RBD	Raf-like Ras-binding domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR003116 all species →	Domain	Raf-like Ras-binding	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04365	BRAF; B-Raf proto-oncogene serine/threonine-protein kinase	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.