Gene detail

Detailed information of gene06324.t1 in Actinoscyphia liui

Genomic Location: chr2:32698903...32711276
NR annotation: XP_020894557.1, protein kintoun [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene06324.t1

ATGTCTACAGACAATAAAGAGGAGGATTTTCAAATCACGAATGAGGAGCTTGACAAGTTTCAAAAGGCAATGCACAATGAGGAGTTTCGTAAATTGCTTGTTGAATACGCACAGGAAATCTCTGATCCTGAGAACAAGAAAAAATATGAAGAAGAAATAGCACAGATGGAGAAGGAGCGAGGGATGGACATCAAGTTTGTAAACCCAGAGAGTGGATTTGTATTGAAAACAACAAGAATCACTGATGGACTAAAAGCTTTTGTCAACATCTGTTACAACGAGCACATACAGAAAGCTTCTTCTCGTTTCACTGAAAAAGAAGAATATGGCAAAAAGAAAAGGGGTGAGCAATGGAGCATACCATTTAGTCTCTCACAACCAAGGGATGATTTAGACAATGCCGGTAAGAATTGTGTAGTGTTTGATGTGGTGTTCCATCCTGAAACATATCAGAAAGGCCAACAGGATCCACGGTTCAAGCAAACAATAATGAATACTGCTCTGGATGGAATAGAGCAACAATTAAATGTTAAACTTGATAGTCAAAATTTAAAATTCCCCAAGTTAAAGTTCAAAGGCATGAAGCAACCTACTGTGATCAGAACTAAATGCAAGAAGCAACCAGAAGAGTTACCTGAAAACAACGTTGGTGGACTACCATTCCCATACCCATATGACGAGAAAGCAGCATCAACAACAAAAGAAAATACAAATCACAAGAAGAAGTCGAAAATCAGCAACACACAAACTGCTAATGACAATGACAACAAATCTGAGTTAAGCAATAACTGTTTGAATTCCAATGGTCATGAAAAAAATTCAGCCGAAAGCAAGAAACATCAAGTAAATGAGCCAGTATGTCACATTCTACATCGTGGTGTCATTGATTTTCAGAACTTCACAAATGCCAGGGATTCCTGTACCAGCACAAGACCCAAGGAGATTGTTGTTGCCATTGAACTCCCAAAATTGAAATCAACAGGAACTGTTGAACTGGACATATTTGAGAAGCAGCTAATCTTACACAATGAAGATCCTGCATACCATCTTGACTTAGCTTTGCCATTCCCTGTAGATGAAGCTAATGGCCATGCCAAGTTTGACAAGAGCAAACATGAACTTGTTGTCACTTTGCCGGTCTTGAAACCTGAGACCCCTCCTCTTCCATACACTCAAATACCTAACACACAAGATGAACAAAAAGATGAACAAGAATTAACAGAGAACTGCAATAGTGAATGCAACAATGAAAACCAAAACTGTGAGAGTCCCTGCGAAAAACATTCAAAAACAGCTAGCAATTCACATGAGGAACTATCTGCAAATAGCAGCATGGAAAATGAAAACAAAGATCTTTCTCCCGATAGGAATTCAGAATCTAGTAAACATTCTAACGAAATTAACTTTAATGGTCCATCAAATGAACTTATTGATGAAAACTCTGTTGTTAATGACAATACTCAAAAGGAAGTACAATCTGATTGGACAACCAGTGACGAAGGATTCGTTATAATGGATGATATTATAAGTCTTTCTGATGGAGAAGTACGCCACAGAGAGTATGGCATCCGTAACTCTGGGCTGGGTTCTAAGGATATCCATTTTGAAATCCCTCCTAACTTAACAGAAATGTCATCACCTTTCTTCTTCACATCCCCTCCATATTCATACCATCAAGACAGCGATACTGTGACATTTGTGATCCATGTACCTGGCGTCACCATGGAAAATGTCTCTCTTGGGTTCAATGACAATAAGTGTTACATCAACTTTCCTTCTGAGAAGACCAAACCTGGTCACCTCCCTGCACCGGACTATGCATTGTACATCTCTTTTGCTGATGACCACACCCTTGCTGCCAACAACTGTCATATTGATGTCAATGACGAGAACCTGGTACTAACCCTGACAAAAGATGACACATGTAAAGGATTATGGGACAATTTCAAGGCAGGGCCGGGCGAGGAGGAACTTGAGGAAAAGTTTTTCATTACTGATAAGAATGTTGAGTTAATGATGCAAGAAATATCCCAGCAAGACCCATGGGCTGATCGCGAAGAGTATGCAACAGATTTGAAAATTCGTTCAGTGGCCGACGATCACCTGACCATCGAGTTACAAAACAACCTTGCTGATGCAGTAAAAGAAAACACCCAAGAACACGTGTTGAAGACACAACAGCCGACCAAACAAGAAAGTAACAGTGAAAAGACTAACCATAGTGCCATGGAAGATGCTTTACTGGACAACTTGGATCTAAAGGAAGGCATTTTATCCAACAAGATGCACGAATTAAAAGTACAGAATTTATCAAGTCCCGACGAGGGGATCGAATACGACATGTACCGCAGTGAAAGGCGGGAGAAGTACGCTAGTGGGTTAACAGAGCGTATTGCTGTGGCCACCGACCCAAAAATGGTCCAAGAACATGGACATAAAGTAAAACCCGACGAGACCCGACGGAAAAGTCGATCAGAAAGCACCGACTCTTTGTCGTCCGACCGCTCAGATTCAAGCGAAAGGCGAAAAAGTCGGTCAGATAGCATCGATTCTGTGTCGTCTGATATTTCATCAACTGCAATACCGACCAAGTCGTGCATCCGAAGAACTTCCAGCACTTCAACAGATGACGACGATTTTGACCTTAGCAACCCTCTGTCTCCTAGCAACGGGTCGTGGGGATCTCCAGGGAGACGCAATGTACGGTTCAACCTTAACCCCAGTGTGCGAGTATTTAGCAACAAAAAGGATAAACAACGATGGAAAATGGAGCAGCGGTTGAAAAAGGACAGGCTGCAGGTTCAGAGAGAGAATAGCGAAGATAACAAAGAGGCGACAATCCATGAAGAACGCCAGGATGAGAACCAGGATGGCGAGAATGCGCAACAACGTAAAGACAGCGAGAGTAGTGTGGACGAAGAATGGACGTTAGTTGATAAACCTACTGATAACAATTTATCCAATAATTTAATATTCCAACTTGACGATTAG

Transcript

gene06324.t1

TGAAAAGCAACAAACAAAACGTGTTTACCAAACAACGGTGCAAAAACACATTTTCTCCTCAAATTTCTTCATTTTTTACACCTGAAAACATGTCTACAGACAATAAAGAGGAGGATTTTCAAATCACGAATGAGGAGCTTGACAAGTTTCAAAAGGCAATGCACAATGAGGAGTTTCGTAAATTGCTTGTTGAATACGCACAGGAAATCTCTGATCCTGAGAACAAGAAAAAATATGAAGAAGAAATAGCACAGATGGAGAAGGAGCGAGGGATGGACATCAAGTTTGTAAACCCAGAGAGTGGATTTGTATTGAAAACAACAAGAATCACTGATGGACTAAAAGCTTTTGTCAACATCTGTTACAACGAGCACATACAGAAAGCTTCTTCTCGTTTCACTGAAAAAGAAGAATATGGCAAAAAGAAAAGGGGTGAGCAATGGAGCATACCATTTAGTCTCTCACAACCAAGGGATGATTTAGACAATGCCGGTAAGAATTGTGTAGTGTTTGATGTGGTGTTCCATCCTGAAACATATCAGAAAGGCCAACAGGATCCACGGTTCAAGCAAACAATAATGAATACTGCTCTGGATGGAATAGAGCAACAATTAAATGTTAAACTTGATAGTCAAAATTTAAAATTCCCCAAGTTAAAGTTCAAAGGCATGAAGCAACCTACTGTGATCAGAACTAAATGCAAGAAGCAACCAGAAGAGTTACCTGAAAACAACGTTGGTGGACTACCATTCCCATACCCATATGACGAGAAAGCAGCATCAACAACAAAAGAAAATACAAATCACAAGAAGAAGTCGAAAATCAGCAACACACAAACTGCTAATGACAATGACAACAAATCTGAGTTAAGCAATAACTGTTTGAATTCCAATGGTCATGAAAAAAATTCAGCCGAAAGCAAGAAACATCAAGTAAATGAGCCAGTATGTCACATTCTACATCGTGGTGTCATTGATTTTCAGAACTTCACAAATGCCAGGGATTCCTGTACCAGCACAAGACCCAAGGAGATTGTTGTTGCCATTGAACTCCCAAAATTGAAATCAACAGGAACTGTTGAACTGGACATATTTGAGAAGCAGCTAATCTTACACAATGAAGATCCTGCATACCATCTTGACTTAGCTTTGCCATTCCCTGTAGATGAAGCTAATGGCCATGCCAAGTTTGACAAGAGCAAACATGAACTTGTTGTCACTTTGCCGGTCTTGAAACCTGAGACCCCTCCTCTTCCATACACTCAAATACCTAACACACAAGATGAACAAAAAGATGAACAAGAATTAACAGAGAACTGCAATAGTGAATGCAACAATGAAAACCAAAACTGTGAGAGTCCCTGCGAAAAACATTCAAAAACAGCTAGCAATTCACATGAGGAACTATCTGCAAATAGCAGCATGGAAAATGAAAACAAAGATCTTTCTCCCGATAGGAATTCAGAATCTAGTAAACATTCTAACGAAATTAACTTTAATGGTCCATCAAATGAACTTATTGATGAAAACTCTGTTGTTAATGACAATACTCAAAAGGAAGTACAATCTGATTGGACAACCAGTGACGAAGGATTCGTTATAATGGATGATATTATAAGTCTTTCTGATGGAGAAGTACGCCACAGAGAGTATGGCATCCGTAACTCTGGGCTGGGTTCTAAGGATATCCATTTTGAAATCCCTCCTAACTTAACAGAAATGTCATCACCTTTCTTCTTCACATCCCCTCCATATTCATACCATCAAGACAGCGATACTGTGACATTTGTGATCCATGTACCTGGCGTCACCATGGAAAATGTCTCTCTTGGGTTCAATGACAATAAGTGTTACATCAACTTTCCTTCTGAGAAGACCAAACCTGGTCACCTCCCTGCACCGGACTATGCATTGTACATCTCTTTTGCTGATGACCACACCCTTGCTGCCAACAACTGTCATATTGATGTCAATGACGAGAACCTGGTACTAACCCTGACAAAAGATGACACATGTAAAGGATTATGGGACAATTTCAAGGCAGGGCCGGGCGAGGAGGAACTTGAGGAAAAGTTTTTCATTACTGATAAGAATGTTGAGTTAATGATGCAAGAAATATCCCAGCAAGACCCATGGGCTGATCGCGAAGAGTATGCAACAGATTTGAAAATTCGTTCAGTGGCCGACGATCACCTGACCATCGAGTTACAAAACAACCTTGCTGATGCAGTAAAAGAAAACACCCAAGAACACGTGTTGAAGACACAACAGCCGACCAAACAAGAAAGTAACAGTGAAAAGACTAACCATAGTGCCATGGAAGATGCTTTACTGGACAACTTGGATCTAAAGGAAGGCATTTTATCCAACAAGATGCACGAATTAAAAGTACAGAATTTATCAAGTCCCGACGAGGGGATCGAATACGACATGTACCGCAGTGAAAGGCGGGAGAAGTACGCTAGTGGGTTAACAGAGCGTATTGCTGTGGCCACCGACCCAAAAATGGTCCAAGAACATGGACATAAAGTAAAACCCGACGAGACCCGACGGAAAAGTCGATCAGAAAGCACCGACTCTTTGTCGTCCGACCGCTCAGATTCAAGCGAAAGGCGAAAAAGTCGGTCAGATAGCATCGATTCTGTGTCGTCTGATATTTCATCAACTGCAATACCGACCAAGTCGTGCATCCGAAGAACTTCCAGCACTTCAACAGATGACGACGATTTTGACCTTAGCAACCCTCTGTCTCCTAGCAACGGGTCGTGGGGATCTCCAGGGAGACGCAATGTACGGTTCAACCTTAACCCCAGTGTGCGAGTATTTAGCAACAAAAAGGATAAACAACGATGGAAAATGGAGCAGCGGTTGAAAAAGGACAGGCTGCAGGTTCAGAGAGAGAATAGCGAAGATAACAAAGAGGCGACAATCCATGAAGAACGCCAGGATGAGAACCAGGATGGCGAGAATGCGCAACAACGTAAAGACAGCGAGAGTAGTGTGGACGAAGAATGGACGTTAGTTGATAAACCTACTGATAACAATTTATCCAATAATTTAATATTCCAACTTGACGATTAGTACAAATTCAGACGGAATTTTCTTGTGTTATGCGTTTGAAACGCCAAGAATCCCTCTTTAAAAAGAAGTTGTAGATTATGAACAAAAGGTGTGCTTGTGACAAAACTTTTCGGTGAATGTTAAAATAAAATGAGTTTACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BPI1	Protein kintoun OS=Mus musculus OX=10090 GN=Dnaaf2 PE=1 SV=2
Q5FVL7	Protein kintoun OS=Rattus norvegicus OX=10116 GN=Dnaaf2 PE=1 SV=2
B1H1W9	Protein kintoun OS=Xenopus laevis OX=8355 GN=dnaaf2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004786 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18201 all species →	PIH1_CS	PIH1 CS-like domain	Domain	Interproscan
PF08190 all species →	PIH1	PIH1 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041442 all species →	Domain	PIH1D1/2/3, CS-like domain	Interproscan
IPR012981 all species →	Domain	PIH1, N-terminal	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan
IPR034727 all species →	Family	Kintoun	Interproscan
IPR050734 all species →	Family	PIH1 family, Kintoun subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22997 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0070286 all species →	Biological Process	axonemal dynein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19751	DNAAF2, KTU, PF13; dynein axonemal assembly factor 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →