Gene detail

Detailed information of gene06366.t1 in Actinoscyphia liui

Genomic Location: chr2:33112514...33121019
NR annotation: XP_020893805.1, elongator complex protein 3 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZHS1	Elongator complex protein 3 OS=Gallus gallus OX=9031 GN=ELP3 PE=2 SV=1
Q5HZM6	Elongator complex protein 3 OS=Xenopus laevis OX=8355 GN=elp3 PE=1 SV=1
Q5RIC0	Elongator complex protein 3 OS=Danio rerio OX=7955 GN=elp3 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004622 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16199 all species →	Radical_SAM_C	Radical_SAM C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR034687 all species →	Family	Elongator complex protein 3-like	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR039661 all species →	Family	ELP3/YhcC	Interproscan
IPR032432 all species →	Domain	Radical SAM, C-terminal extension	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11135 all species →	HISTONE ACETYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0002926 all species →	Biological Process	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07739	ELP3, KAT9; elongator complex protein 3 (tRNA carboxymethyluridine synthase)	EC:2.3.1.311	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.