Gene detail

Detailed information of gene06609.t2 in Actinoscyphia liui

Genomic Location: chr2:35591307...35607910
NR annotation: XP_028513647.1, oxysterol-binding protein 2 isoform X3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene06609.t2

ATGAACAGCGAGCTGACTGCCTTGCTATGCCAAGCGTGCTGCCCTTGGCTGATAGATGTGGAGATCCAAACTGAACCAATACAAAATGAAGAAGAGGAGGAGCCTTTTGAAGACATCAAGCCATTGAGTTCCAAGCTAGAAGACCTGCACACCTGTAATGACTTAGTAGGAAAGCATGGATCCGCTTTGCAAAGGTCTATAGGGGAGTTGCAAGAAATAGAGGATCACCAGGCATTGATTATCAAGCTTAAAGCTGTCAATGAGAAGGCTACTCTCTTCAGAATCACATCAAATGCCATGATTAGTGCTTGTGCAGAATTTCTGGACTTAGCTCAAGCACAGGAAAAGAAGTGGCACAAGTCATTACAGTATGAAAGACACCAGCGTATCAACCTAGAAGAAACAGTCGAAGCCCTTGCACAGCAACACCAAAAATTAGAAAGAGCATGTCAGCGCCAAGGCGGCGGCCCACCAGTAACACATGAACCCCAGGACACCGCAGCCAATGATAGTGAAGACGAAGAAGATCATGAATTCTTTGATGCAATTTCGGAACACTCAGATAGTGATTATGGAATAAGAAGCAGCCGGGAGAGTCTTCAGAGCACTACTAGTTCAGATATTAGCTCTGGAAGGGACAGTGATGCCAAATCGTTATTACCCAAAGAGGATGAGAAATTAGAAGATATCAATGCTACTACTGTGTCAACGAGTGTGTCCACTGGTTCTTTTGGTTCCATGACTTCTTATTCTTCATCAGACAAATTTTTGCCGAAAACATATAGAACTTCTATACCTGTCAGACCCGACATAAGCATTAACTTGTGGAGTATACTGAAGAATTGTATAGGGAAGGAACTTACAAAGATTCCTATGCCAGTTAACTTTAACGAGCCTTTATCAATGTTACAAAGACTGACAGAAGACATGGAGTACTCAGATGTACTAGACAGAGCTGCAGCATGCCATTCGTCCCTTGAACAGATGTGCTACGTTGCAGCTTTTACCGTTTCATCATACTCTACTACCAGTCACAGAACAGGCAAACCATTCAACCCTCTGCTAGGAGAAACGTTTGAGTGTGATCGCTCAGGTGACAGTGGATGGCGTTCACTTGCTGAGCAGGTGAGCCATCACCCACCAGCTTCGGCCCTTCATGTTGAGCATAAGGACTGGATCTTCTGGCAGGAGTTCACGGCTACCAGCAAGTTCCGTGGCAAGTACCTTCAGATTATCCCACAAGGTGTAGCCCATTTGAAGTTTAACAAGTCAGGGAACCACTACACTTGGAGAAAAGTTACTACAACAGTACATAACATTATTGTAGGCAGACTGTGGATTGACCAGTCTGGTGAAATGGACATAGTTAACCATGTGACAAATGAAAACTGTCATCTCAAGTATGATGCATACAATTACTTTGGTAGAGATACTCCTAGAAAGGTTACTGGGGTAGTCACCGACTCTGCAAAGGTTGTACGATATGTGATATCTGGGACGTGGGACAATAAGATTGACTGTGCTAAAGTTGTTTATCACAAGATGAGTCCGTCAAGTTTTAAAGGCACTGTCACAGCTCAAAAGGGTACCCCACAGACTTTACCTGCCTCTACGATATGGCAGAGGGTACTTCCTCCGCCAGAACATGATAAAATGTACTTCATGACAGAGTTCGCCATTACACTGAATCAAGAGGAGGACCACATTTCTCCCTGTGACACACGGAACAGGCCCGACCAGCGCTTAATGGAAGAAGGAAAGTGGGAAGAAGCCAATCAAGAGAAATTGAGAATAGAAGACAAGCAGCGAGCATGGAGAAGGAGAAGAGAGCAAGAAAGTGCAGAAGCACTGAACGAGGGCATAGTTCTTGATGGCTACAACCCCTTGTGGTTTGAGCAAATCGTGGATGAGTTGACAGACACGCCGATGCATGTTTACAAGGGTGGATATTGGGAAGCCAAAGAGAAATCAGACTGGTCTATGTGTCCCGATATTTACTGA

Transcript

gene06609.t2

TCCTGCTACGAGATTTCTTGAGTCATGCCCGTACACGAAGATTCCTTCTACCGCCTAGAAGAGTCGAGCGTCTAGAATGAACAGCGAGCTGACTGCCTTGCTATGCCAAGCGTGCTGCCCTTGGCTGATAGATGTGGAGATCCAAACTGAACCAATACAAAATGAAGAAGAGGAGGAGCCTTTTGAAGACATCAAGCCATTGAGTTCCAAGCTAGAAGACCTGCACACCTGTAATGACTTAGTAGGAAAGCATGGATCCGCTTTGCAAAGGTCTATAGGGGAGTTGCAAGAAATAGAGGATCACCAGGCATTGATTATCAAGCTTAAAGCTGTCAATGAGAAGGCTACTCTCTTCAGAATCACATCAAATGCCATGATTAGTGCTTGTGCAGAATTTCTGGACTTAGCTCAAGCACAGGAAAAGAAGTGGCACAAGTCATTACAGTATGAAAGACACCAGCGTATCAACCTAGAAGAAACAGTCGAAGCCCTTGCACAGCAACACCAAAAATTAGAAAGAGCATGTCAGCGCCAAGGCGGCGGCCCACCAGTAACACATGAACCCCAGGACACCGCAGCCAATGATAGTGAAGACGAAGAAGATCATGAATTCTTTGATGCAATTTCGGAACACTCAGATAGTGATTATGGAATAAGAAGCAGCCGGGAGAGTCTTCAGAGCACTACTAGTTCAGATATTAGCTCTGGAAGGGACAGTGATGCCAAATCGTTATTACCCAAAGAGGATGAGAAATTAGAAGATATCAATGCTACTACTGTGTCAACGAGTGTGTCCACTGGTTCTTTTGGTTCCATGACTTCTTATTCTTCATCAGACAAATTTTTGCCGAAAACATATAGAACTTCTATACCTGTCAGACCCGACATAAGCATTAACTTGTGGAGTATACTGAAGAATTGTATAGGGAAGGAACTTACAAAGATTCCTATGCCAGTTAACTTTAACGAGCCTTTATCAATGTTACAAAGACTGACAGAAGACATGGAGTACTCAGATGTACTAGACAGAGCTGCAGCATGCCATTCGTCCCTTGAACAGATGTGCTACGTTGCAGCTTTTACCGTTTCATCATACTCTACTACCAGTCACAGAACAGGCAAACCATTCAACCCTCTGCTAGGAGAAACGTTTGAGTGTGATCGCTCAGGTGACAGTGGATGGCGTTCACTTGCTGAGCAGGTGAGCCATCACCCACCAGCTTCGGCCCTTCATGTTGAGCATAAGGACTGGATCTTCTGGCAGGAGTTCACGGCTACCAGCAAGTTCCGTGGCAAGTACCTTCAGATTATCCCACAAGGTGTAGCCCATTTGAAGTTTAACAAGTCAGGGAACCACTACACTTGGAGAAAAGTTACTACAACAGTACATAACATTATTGTAGGCAGACTGTGGATTGACCAGTCTGGTGAAATGGACATAGTTAACCATGTGACAAATGAAAACTGTCATCTCAAGTATGATGCATACAATTACTTTGGTAGAGATACTCCTAGAAAGGTTACTGGGGTAGTCACCGACTCTGCAAAGGTTGTACGATATGTGATATCTGGGACGTGGGACAATAAGATTGACTGTGCTAAAGTTGTTTATCACAAGATGAGTCCGTCAAGTTTTAAAGGCACTGTCACAGCTCAAAAGGGTACCCCACAGACTTTACCTGCCTCTACGATATGGCAGAGGGTACTTCCTCCGCCAGAACATGATAAAATGTACTTCATGACAGAGTTCGCCATTACACTGAATCAAGAGGAGGACCACATTTCTCCCTGTGACACACGGAACAGGCCCGACCAGCGCTTAATGGAAGAAGGAAAGTGGGAAGAAGCCAATCAAGAGAAATTGAGAATAGAAGACAAGCAGCGAGCATGGAGAAGGAGAAGAGAGCAAGAAAGTGCAGAAGCACTGAACGAGGGCATAGTTCTTGATGGCTACAACCCCTTGTGGTTTGAGCAAATCGTGGATGAGTTGACAGACACGCCGATGCATGTTTACAAGGGTGGATATTGGGAAGCCAAAGAGAAATCAGACTGGTCTATGTGTCCCGATATTTACTGAGATTCGCCTCCATGCAATCACAAATAGCTCTTGTCCAATGGTTACAAGGCGGCATGTGTATATGTGATAAATAAGTGTAAAAGCGTACTTTTGTTTGAAATGCTGAAGTGGGGACATTGACATGGCAGTAAATTTCATTCCATAGTGGTAATAATTTGAATTGAGCAAACGAGAGAGAGAGAGAGAGATATGTTTTTTGAATATCGTACTAGTACAAATCAATAAATATAGAAGCTTTTTACCAGTGTCCAAAGAGTAAATAAACATAATGGAGATTTTGAATAATTGTTTAATGTTAGATTGTTTTTAAGTTTGGCAGGAATACCATGCTTTATCCCACACCATAGAAAATACAGCCAATCAGAGAGCAGTATTGCCATTGAATATTCGGTGGTATTCCACTCTTCCTTCCCATCAGGCACCGCAGTTGTAGGTATTTTCTATGTTATGGGATAAAATAGTTATACGCCTTCTCGTTGTATACCATGGAACATCCCACTTGTCACTTGCCTAAAGGCTCGTGTGTATACTTAGAAAATACAAGTGACGCGTGAGATATTCTGTGGTATACAACTCGAAACCGTTGAATAACTAGTATTTATCTGATGCTTCTACTAAATACAATTCCCAAAGAAATAAAGTACAAAATATACCAGATCCATAACATAGATAGGCAGGCCTGTCAAAAAGTACCAGCCATATACATTTGTGTTTTCACCGGCTGTAATTTGCTGCAAAAATATATTTTATGAAGTCCATATGCATAGGGAAAAATGTTATAAAATTCATGAATAGTTTTTGTCATATTCCCATTTTGAATCGATGGGAATAGTTCGTTTTTCCCATTGATTCAAAATGGGAATATGACAAAAACCATTAATGGATTATATAATTTTTTTCCTGTGATGGGAGCCTCTAACTCCAAGAATCATCTACTTTACAAAATCTTCTGTCTATTGCAATTCTTTTTGACAACTCTGGGCGCAGTTGTTCGAAAGCCGATTACCGCTAATCCAGGATTAAACCTAAGAAAACCATTCATTTTAACCCTGGATTAAGACTAATCAGCCTTCGAACTAATTCCCTCTCCCTCCCGAGAGAAAAAAATATGGAAACTGTCTTCCTGGCATTACATAAACATTTAGATACTTCCAGCAAATAATTCTTGCCTCGGTTAAATTTATAATAAATTATAATAACGATTTTTATAACTTAGTTGTTTTCAACAGCAAATCCACTCTAGATAAATTAGACTTGGCAATACAGATTGAATGAGGTCGACCTAGACCTGTAGAGCATAGAGTTGTTGGCAATACTAAAATCCATGAACAGTTTTTGTCATATTCCCATTTGAAATCAATGGGAATAGTTCGACCATCAATGGGTTTACTGAACTATTCCCATTGATTTCAAATGGGAATAATATGACAAAAAACATTCATGGATTTTATAATTTTTTTCCTGTGACAAGGACATTAAGGGGCGTCCCCAGGAACCCTCCCCTGGGGATGTCTCTGACATTAAACACTAACAGTCACAGCCTTCAACTTCATGTCTTTCTGCTCTTAAACTGACATGGTCATTTGGGAGAGTCATCCCTTCCAGGGCCCTGTTGATTTCATGTTGGTTTATGCCATCAAGAATAGAATCCACAAGTTCTTCAAAACACTCTGTAACGTTGATATTTTTCTCAGCGCTGACTTCAAAAAATGTGAGGTCAAATTGATGAGCAAATGTCTTTCCTTCGTTTGATGATACTTCTCTGTCGCATTCCAAGTGACACTTGCTTCCTATGAGAATAGCTTTGATAGAGTTTGGGTCACAACTCCTTATCATTTCCTCATAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5QNQ6	Oxysterol-binding protein 2 OS=Mus musculus OX=10090 GN=Osbp2 PE=1 SV=1
Q3B7Z2	Oxysterol-binding protein 1 OS=Mus musculus OX=10090 GN=Osbp PE=1 SV=3
Q969R2	Oxysterol-binding protein 2 OS=Homo sapiens OX=9606 GN=OSBP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001576 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01237 all species →	Oxysterol_BP	Oxysterol-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037239 all species →	Homologous_superfamily	Oxysterol-binding protein superfamily	Interproscan
IPR018494 all species →	Conserved_site	Oxysterol-binding protein, conserved site	Interproscan
IPR000648 all species →	Family	Oxysterol-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10972 all species →	OXYSTEROL-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0015248 all species →	Molecular Function	obsolete sterol transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0097038 all species →	Cellular Component	perinuclear endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20456	OSBP; oxysterol-binding protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.