Gene detail

Detailed information of gene06751.t1 in Actinoscyphia liui

Genomic Location: chr2:37381094...37402536
NR annotation: XP_028515372.1, eyes absent homolog 1 isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene06751.t1

ATGGCCACAGATCAAGGGCAGTCAGATTCAAGTAGTAGTTTGGAGGGAATACCAGTTAAAAGAGCCCGTAAAGACAACACTTCAGACGATAAAGAAAGTTTAGACTCAAGTCGTGCAAGCACCCCAGAGCAGCCAACAAGTAATGGTGTCACTAAAGTACTCCACATTATCTCCCCTGACCTCGACAAGGCAGACTCCTGGGATGTAACCACAGAAACATCAATATCTGGTAATGGAAGCGACCTCGGCCCAGGTGTGATTGCACCTGTATCGACAACAACATTAGAGTACAGCGACACTGGATCAACTGTTACTAACCTGGATAGCTGTGCTTACGGTGTGCAAACAATGAATAATACAGACAGTACATCACAGTTTCAGGTGTCTGGACAGTATCTGACGAATCCTGGAGGGTTCTTTAGTCAGCGTTCCTACCCACACATAGTGCAAACTCCAGCACAACATGGCGTCACTCAGTATTCGACAGGGAGTGGGGTCATACAGGGCACTGGGATGACTTCAGGCACCAGTTATCTGTATTCTCAGACAGGCAATCAATCTGGATTCCCATTGGTTCAAACTGTGAGGTATCCTACCAGTAATTCACCTCCAAAATCGAACAGCGAAACTGGCCCTACATCAACAGACCAGAACCAAGCTGGCGCAATCCCTGATATATCAATTCTTCGACAACCCGTCAGTCCCTTTAATGCCCCTTATGGCACGACAGCATACTCAACCGTCATACAACAAGGGCAGTCGGGAAATTTTAATACTTCATATCCTCAGCAGTACTCAACTGTAACATATGTTGCGTCGACCTCGACACCCACTTCAACAACAAGTGGATACACACCCCAGCAGAGTGGTCAGGCGACGTTTCAATATCGCTATGGGCAACAGAACAATGCACAATCAGGAGGGTATGCATATAGCTTTCTCAACGCACCGCCACCGGCATACTCCCCTCGCACTTACATTGCGCAAATGAACAGTACACCACCGCCAAACACTGTGGCAGGTCAGACAAGTACTTACCAGTTGACGTCATTGGTTCCTAATCAATCAGTATCCGATAGTGGTATTATGACATCAGTTGTCCAATATTCACCCACTATATCAACAAGCCCAAGCCCTCCTCATTCACCCGGCAAAGTGCAAGACAATTTAAACAATGCCTCCTTACTCACAGGAGGCACAGATGACACAGTTGTGGGGCTCAGTGATGGTGTTATAGTGGCAGGAGGAAATAGCAACAACATTAGAGGGCGGGGCAGAGGGGGGCGTGGTGGCAGAGGAAGAGGGAGTGGGCGGGGCAGACGGTCGACAAGTGCTCCACCACCTGAACTGGATCACAACCTTGAGCGTATATTTGTTTGGGATCTTGATGAGACAATAATTATCTTCCATTCTCTCCTGACTGGTTCGTTTGCTTCAAAGTTCGGCAAGGATGCCCCTTCGAGTGTGTCACTTGGTCTTCGCATGGAAGAAATGATTTTTAATCTTGCAGATTCTCACCTGTTCTTTAATGACTTAGAGGATTGTGATCAGGTCCACATCGATGATGTTGCTGCTGATGACAATGGCCTTGATTTAGGTACGTACAACTTCGAAGGTGATGGATTTCATGCTGCTGCCACATCAGCAACTCTGTGCATGGCCACCGGTGTCCGTGGTGGAGTCGATTGGATGAGAAAGCTTGCTTATAGATACCGAAAAATCAAGGAAGTGTATAATAGCTTTAGGAATAATGTTGGAGGTTTACTAGGACCTGCCAAGCGAGAAACCTGGCTGCAACTAAGAATGGAATTAGAATCCTTGACAGACTCATGGTTGACATTAGCCTTAAAAGCTCTTACCCTCATTCATTCAAGATCGAATTGTTTAAATATTTTAGTCACCACCACACAATTATGTCCAGCGTTAGCAAAGTGTTTACTCTATGGCTTAGGAGGTTTATTTCCCATTGAAAATATATACAGCGCTGCTAAAATTGGTAAAGAAAGCTGCTTTGAACGTATAGCAAACCGCTTTGGTAAAAAGTGTACATATATTGTTGTAGGCGATGGCAGAGATGAGGAAGCAGCCAGTAAACAGATGGGTTTTCCATTCTGGAGAGTTAGTGCTCACTCGGACCTGATAAATCTTCATCATGCCTTGGACCTTGGCCACTTGTAG

Transcript

gene06751.t1

TTTCGATCTCTGGTTGCGTCCGTTTGGCGTTCTCCGGTTACAACTTAGCATTTTCTTCCTTTCAGAATCAAACCCGAGGGGCAGTGTTTATTCGCCAAGGGAATAACTTGAGCTGGACAAGCGATGTAAGACGAGTCACCTCGGAGCGCGAGTTTTGATTGCAAGCCGTGAATGGTGAATTAGCAACATGGCCACAGATCAAGGGCAGTCAGATTCAAGTAGTAGTTTGGAGGGAATACCAGTTAAAAGAGCCCGTAAAGACAACACTTCAGACGATAAAGAAAGTTTAGACTCAAGTCGTGCAAGCACCCCAGAGCAGCCAACAAGTAATGGTGTCACTAAAGTACTCCACATTATCTCCCCTGACCTCGACAAGGCAGACTCCTGGGATGTAACCACAGAAACATCAATATCTGGTAATGGAAGCGACCTCGGCCCAGGTGTGATTGCACCTGTATCGACAACAACATTAGAGTACAGCGACACTGGATCAACTGTTACTAACCTGGATAGCTGTGCTTACGGTGTGCAAACAATGAATAATACAGACAGTACATCACAGTTTCAGGTGTCTGGACAGTATCTGACGAATCCTGGAGGGTTCTTTAGTCAGCGTTCCTACCCACACATAGTGCAAACTCCAGCACAACATGGCGTCACTCAGTATTCGACAGGGAGTGGGGTCATACAGGGCACTGGGATGACTTCAGGCACCAGTTATCTGTATTCTCAGACAGGCAATCAATCTGGATTCCCATTGGTTCAAACTGTGAGGTATCCTACCAGTAATTCACCTCCAAAATCGAACAGCGAAACTGGCCCTACATCAACAGACCAGAACCAAGCTGGCGCAATCCCTGATATATCAATTCTTCGACAACCCGTCAGTCCCTTTAATGCCCCTTATGGCACGACAGCATACTCAACCGTCATACAACAAGGGCAGTCGGGAAATTTTAATACTTCATATCCTCAGCAGTACTCAACTGTAACATATGTTGCGTCGACCTCGACACCCACTTCAACAACAAGTGGATACACACCCCAGCAGAGTGGTCAGGCGACGTTTCAATATCGCTATGGGCAACAGAACAATGCACAATCAGGAGGGTATGCATATAGCTTTCTCAACGCACCGCCACCGGCATACTCCCCTCGCACTTACATTGCGCAAATGAACAGTACACCACCGCCAAACACTGTGGCAGGTCAGACAAGTACTTACCAGTTGACGTCATTGGTTCCTAATCAATCAGTATCCGATAGTGGTATTATGACATCAGTTGTCCAATATTCACCCACTATATCAACAAGCCCAAGCCCTCCTCATTCACCCGGCAAAGTGCAAGACAATTTAAACAATGCCTCCTTACTCACAGGAGGCACAGATGACACAGTTGTGGGGCTCAGTGATGGTGTTATAGTGGCAGGAGGAAATAGCAACAACATTAGAGGGCGGGGCAGAGGGGGGCGTGGTGGCAGAGGAAGAGGGAGTGGGCGGGGCAGACGGTCGACAAGTGCTCCACCACCTGAACTGGATCACAACCTTGAGCGTATATTTGTTTGGGATCTTGATGAGACAATAATTATCTTCCATTCTCTCCTGACTGGTTCGTTTGCTTCAAAGTTCGGCAAGGATGCCCCTTCGAGTGTGTCACTTGGTCTTCGCATGGAAGAAATGATTTTTAATCTTGCAGATTCTCACCTGTTCTTTAATGACTTAGAGGATTGTGATCAGGTCCACATCGATGATGTTGCTGCTGATGACAATGGCCTTGATTTAGGTACGTACAACTTCGAAGGTGATGGATTTCATGCTGCTGCCACATCAGCAACTCTGTGCATGGCCACCGGTGTCCGTGGTGGAGTCGATTGGATGAGAAAGCTTGCTTATAGATACCGAAAAATCAAGGAAGTGTATAATAGCTTTAGGAATAATGTTGGAGGTTTACTAGGACCTGCCAAGCGAGAAACCTGGCTGCAACTAAGAATGGAATTAGAATCCTTGACAGACTCATGGTTGACATTAGCCTTAAAAGCTCTTACCCTCATTCATTCAAGATCGAATTGTTTAAATATTTTAGTCACCACCACACAATTATGTCCAGCGTTAGCAAAGTGTTTACTCTATGGCTTAGGAGGTTTATTTCCCATTGAAAATATATACAGCGCTGCTAAAATTGGTAAAGAAAGCTGCTTTGAACGTATAGCAAACCGCTTTGGTAAAAAGTGTACATATATTGTTGTAGGCGATGGCAGAGATGAGGAAGCAGCCAGTAAACAGATGGGTTTTCCATTCTGGAGAGTTAGTGCTCACTCGGACCTGATAAATCTTCATCATGCCTTGGACCTTGGCCACTTGTAGCATGCAGCACAGTCACATGGATTCTTATAACAAGACATGAGGCGTGGCAGAAGTTGACTGTATCAAGTATTTCTGTACTAAGTTCCATAACAATTCTTACTTAGAGATGGTGAATTAACAAAGTCCTGCAAACATTTTCTCAGCTTTTGACACCTCAATTCCTATCAAGTAGGTCTTAAAATATTCTTTTTTAGCAAAATTCAGAACCTACATTTGTATAAATTTGTATGAAACAGTTTTGGGATAGAAATTGAAGTAAACATAGTTAGGATTTTGTTTTGAAACCCATACCAAGCCATCACAGCAAGTCGTGCAGTTGCTACATTCACCATTTCTTTATAAGAACTTCCAACATTCACATCCCCACCTAACTTGGAATATACTTGACAGTAAAGATATGCCAACAGCAGAACCCTGTTTTCTGATACTCCCAAGGGAAGCCAACAACTGTTCAAAATAGCAGGGATGTGAGATAGTGGATAGTAATTGACTGGAAAATGATCCAAGGGAAACGGTTTGTATGTTAAGAAGAGGTTTTGAGGTATCCATGTTCAAGATGATGGTAGTGTCGGTGTATTTCTTAGGTCCAAGGTGGTGCTCGTGGTCCTCTCACATCATAGTGAAAGCATTTTGTTGTTGGCCATAATAAGTATTCATTTACCTGGGTTTACCCATACCCTTGGTTGCCAGAGGTTAACCCCTATCCCACCCATCCCACTCCCGCAATAAGGAGAGGGGAGGAGAGATTATCCTCTGGCACCCTAGGAAGTATTCATAAGAGAAACGCCTCAAATTACAAATTGAGACCATGGTTTTACATAAGCATTAATTCGACTATTCTCAATGAAGAATATTAGATCATCGCATTGTACAGAAAACAGAGCTTCAAAATCGACTTCCATAAATTTGAAAATTCAAATGCATTTTTTTTCAAGACTTGTATATGTATTTGTATATTCCAACAATTTTTAAAGAAATTAAAAAAAATCCATCAACTATTTGTTGTTCGAGAAGAAAGAAAAGGTTACATTACCTAATGAATATAATAAGTATAACTTTATAAATTCTCTCTGTTTGTGTCGATTGGTATGTTTAAGATTTTAAGAATTATTCTGTTTTTTTTTTTTTGTGGCATTCTGAAGGTAGTTTACTTTTGAACGTAGTTTGTTGCTTTGAAAAGTCAGCTTATCTCACTGCATGAGCCTGCCATACTGCTCACTAGTTAGTGGTGCTCGTCTTTTTAAGCACATATGAGATAAGTTTGATATTAAGTCTCTGCATGTTGCTTGAACTTATACTTATGCATATGGGTTTGAGCAGATTTTGTATGACCGTGAAAATCTCCCTGCTGTGCCAAGTGACATGTCTCAACGTTTTGATTGGATAAGAAAAAAACATTTGACCAATCAAAATGTCAAGACATGTCACATGACAGAGTTTTCCATAGCCATACACAATCTGCTCTAGCGATGACCTGCTTAGCCTGATTTTCAGACTGTCGGAGATCGTTCGTTTCATTTCCTCTCCCCTCCCAGTCTGAAAATCTTGCTATGACCTGCAGGGCTGTTTTGTGACAAGATATTCAAGCAATGTATTGAGAGTAAATTAGCCTCAGGAGCCACAGTTCACATAACTTTTTTTGTGTGTGGAAAATTTGATGCGTGGTACGAAATGATTGTAATATGGTTATTGTTAATATTTTATTTACACAATTTACTATACATCTAATAAATCTTATATTGACTTTAATACACTTTGAGAAGTCTCCAAGGGCAGATTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97767	Protein phosphatase EYA1 OS=Mus musculus OX=10090 GN=Eya1 PE=1 SV=3
Q99502	Protein phosphatase EYA1 OS=Homo sapiens OX=9606 GN=EYA1 PE=1 SV=2
Q9Z191	Protein phosphatase EYA4 OS=Mus musculus OX=10090 GN=Eya4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002701 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028472 all species →	Family	Eyes absent family	Interproscan
IPR006545 all species →	Domain	EYA domain	Interproscan
IPR042577 all species →	Domain	EYA domain, metazoan	Interproscan
IPR038102 all species →	Homologous_superfamily	EYA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10190 all species →	EYES ABSENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0045739 all species →	Biological Process	positive regulation of DNA repair	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:2001240 all species →	Biological Process	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15616	EYA1; eyes absent homolog 1	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.