Gene detail

Detailed information of gene06783.t2 in Actinoscyphia liui

Genomic Location: chr2:37836690...37848710
NR annotation: XP_020893937.1, plasminogen isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene06783.t2

GTTTAACATAGACATAGCCATACAAGCAGAAAGCTCACAACTCAGAATCATTTGGTTGCAGATATCAGTGCCATGCAGTTCTCAAGCCATATTGCGTTTGTAGTTCATCTCTTTCTAATCCATTTCGTTTGGGATGTAAATGCAAGATGCCCAGTCAAATTCAGTCCACCCGAAGGCAAGTGCCTCATCGGATGCCTCATGGACTCAGACTGCGACGCAGAAGAAATTTGCTGTACCTCCGGATGCTGGAATTCATGTGTAAAGCTAACGAAATGTCAATTGGAAAAACGGAGGATCCAAAGGCGATCCGGAATACCTTTATTCGTGCCACAATGCGATAGCCACGGCAATTACAAAGAAATTCAATGCGGACAAAAACGGGGCCAGACCAGGTGTTGGCGAGTGGATAAAAAACATGGACGAAAAGTCCCAAATTCTGAGATATCGGTGAACGTTCGCCATCCCCAGATACCAACCACTACTCACATCCTTGATGTTCATTCAGTGGATTATGATAAGAGTCCTGAAGAAGAAAGAGACCCAACTGCAAGCAACAGCAAGTGCTTAAAGAGAAGGAAACGCCGATTAAGGTTGAGGAAAAGATATCCAGGCGTGTTTGTTCCCCAGTGTAAGCACAATGGGAAATTTAAACGAGCTCAGTGTAACGACAAAGCCAAGAAATGTTGGTGCGTTAACCAAACTACTGGGAAGAAAGTCAAGGAAACTGAAGTACGTAACGAGAAACCAAACTGCAGACAAGAAAGCTGTGGTCGCAAGATACACCGCAAGCGCCGAATAGTCGGGGGACGAGTGAGCGATATAGGTGCATGGCCGTGGCAAGCAGCATTGTTTTTAAATGGTACACAGCATAGGTGTGGCGGTGCCCTGATTAAACCATCTTGGATCCTGACCGCTGCACACTGCTTCAAAGATTTTACGGACACATTCCCACCGTCTAATCGGTCCTATAAACACGTGGGTCATTACTCGTCCACCAGCCCATCAGACTGGACTGTTCGTCTTGGCGAGCATTCATTTCTGAGACACGAACGGTCTGAAAAGCATCTCAGAGTGTTGGATATTGTGATACACCCTAAATATACCCCGGCAAATTTATCGCACCCTGGAGATTACGATATTGCTATGGTGCGTATTTCTCGATCTGTCAAACTTGGCCGTTATTTCAACACAATATGCCTGCCACAAAACTTGGAATACTTTAAGCCTGGCCGACGCTGCGTGATTGCAGGCTGGGGGAAGACGTCATGGAATGGCAGCTCATCGCCAGTTCTACGAGAAGCTTGGATTGATTTGGTATCAAGACGAGTATGCAATGCAGCAGGATCCTACGCCGGTAAAATAAGTAAACGATTCCTATGTGCTGGCTTCAAAGAAGGTGGCACTGATGCGTGCGCATACGATAGCGGAGGACCGCTGATGTGCCCATTGGAGGGCGGGCGGTGGGCTCTGGCAGGAATTATCAGCTGGGGAGAAAAATGTGCTTTACCAATGAAATATGGAGTGTACTCCAACGTCCATGAGTTCCTTCATTGGATAAAAAGAAACTTACGGACAGACAGATAGGAGAGAAGTTATATTATTGAATGGCGTAGTTACTTACGACCTACGCGACTAAAACGAAGCAAGCCCAGCCCAGGATGGCTACTACAGAAAGAAATGGCTGCCTCAAGTATTAGAAGTTAAACACTTAATTCTAATATACCAGACACATACATACAAGAGGACGTTTATAACTAAGAGTATGACAGGGCAGGGCTATAATATACTGTATATAAAGAAACTAGAAGTAATCGACTAGAATCCCGTTCCCGCCGGAAGGCCAAATCGGGTTACCTCTATACTCTTTTGTTTTCGCTTCATTGGGAGACTGAAAACAAAAGATTTAGCTTTACAGTATAATTCTAGGGTTATCCGACCCTATTCCCTGTGAATGGGAGAGCTCAGTCAGTTTCAAACTCTGATATTTGGCAAACTGAAAGAATATCCAAATATTTATACATATTGTGTAAGATAGTCAATGGACCCAAAAGTCAAAATCAATACGAAGCTATACATTCAGAAGATCTATTTATCCATTCGTAAGGACTTGTAAATGCAAAGTCGCCATGCATGCTGCAAATTTGTAAAGCTCATATATAAATATATTATGAAATCGCAATATTGTGGCTAGTATAAAGTATGCATTGTTTGCTAAGTTGCCGTTTATATTACATAGCGTACATTGTTTATTTGTTTATTACGTTGTTTACATTGCAGTCTTGTTTACTTCTACTCAACATCAATATTATGCAAAAATAAGAAAGAAAGAATGAATGAATGAATGCAAGAAAGAAAGAAGGAAAGAAGGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAGGAAAGAAAGAAAGAAGGAAAGAAAGAAGGAAAGAAGGAAAGAAAGAAGGAAAGAAGGAAAGAAGGAAAGAAGGAAAGAAGGAAAGATGGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAATCACCATTTCATTCTAACTGGCTGGCATAAATGAATTTCTTAAACTGAAAAATATATTGTAGTTGGTCAAACAACGAAATAGTGAAGCTATAAATCTAGGTGTAGTAGAAATGGACCACATGTACCAGTAAGTTGTAGTTGCTAAAGCAATATTAAGTCAGTCTTTTACGCAATAACAAAAAGAAACCAAAGTACCATATATACCTATTGCTAATGTATCGCTTCTGTCTCTTTTCTCATAAATAGAACAGTATAACGTTTATCAAGTTGTAAAAAGAAAATACGATGGATACTAATAAAAAAGAGCTTACTGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R5E8	Serine protease hepsin OS=Pongo abelii OX=9601 GN=HPN PE=2 SV=1
P05981	Serine protease hepsin OS=Homo sapiens OX=9606 GN=HPN PE=1 SV=1
Q05511	Serine protease hepsin OS=Rattus norvegicus OX=10116 GN=Hpn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000629 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00095 all species →	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan
PF00086 all species →	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036857 all species →	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR000716 all species →	Domain	Thyroglobulin type-1	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan
IPR008197 all species →	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR036645 all species →	Homologous_superfamily	Elafin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0030414 all species →	Molecular Function	peptidase inhibitor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene06783.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.