Gene detail

Detailed information of gene06830.t2 in Actinoscyphia liui

Genomic Location: chr2:38360792...38371916
NR annotation: XP_020908350.1, SH2B adapter protein 1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene06830.t2

CAGTGAAGATTATTTACAATGGTCGAAGCAAAAACGTAGTTCTAAAGGTTTTTGTTTCTCTATCTTGAAGCCATGGTTGTGGTTTTCCACAGTAGAATGTGACGGTAAGACCTGTGTTCTATGGCTTGTTATAATGGCGAAGTTGCCTCGACATTTCCTAGCGGTAGATGGGAGGACTTCTGCAAAGACAGAGCAGAAAACGCTGCGAAAACTTTCTCACGTGAATTCCTTCAGTTCGTGAACGATAACCCAGTGTACGATGTCTCAGGGGCTTCGTACACGTTCTCTAAGCGATTTGTGGACTATTTTCTGGAGTGCTTCAATTATGAGGTACACAAGAACGGGCTGGAAGAAATCGTCGAACCTGAATCACCCACCGAGGTGTTTGGCCCCGATGACTGGGGTTCAAACATACATTTAACAGGAAACTTCAAACATTCACCAGAGAAAAAGGAGCGAGAAAATGCATTCAGCTTTATGCGAAAGCTCAGAGATGTCAAAGACTTGTTTAAGCGCTCAATCGACGAGCCTGCGACGTCTCCTAAAATGGGAGCCCCTGTTGAACAACGAGCCACCTCGCCATCTACCAGCGATGAGCATTCTGCTGATAATCCTAAAACTCTGACCAGTTGCATACGGAAAGAGGCCGTTATGAATTATCTTATGAATTTAGATCAAGGAGTTGATACAGAGGATTTTTTCTGGCAAAAATGTCGAGTCGTGATCTTAAAAGCTCCGGGGGGCTTCATGTTAGAGTTCTACTGTCCTCCTAAGTCACCAAAGCCAAAGAATGGGATATTTTGTTTCTTAATCCATGAAGTACGACCTGCTACTGAGCTGGAGATGCCAATGGGACAGAATGTGTTTGTTATCAAGGCTGTGAATAAAAGAGAATACATACCTAGTACGTCAACATCAACTGCCCCACCCGAATTGCCTACAGTTACTCATTATCCAGTATCTACACCCCCTGGACCCAGAAAGGCTCCACAGTCATTACATCTGAACACACATAACAATGCCGCTAATGATACAGAAACTAGAAATCCAAGAAAGAGAAATCCCCAAAGCCCAGGTGTACGTCATTCATCTCTCAGGACCTTCAACAGACCTCCAAACTTAGAAAGTCCAATTGAGCCTCTAAACAGAGGTCCACCTCCCGAACTTCCACCACGATCGCCGACCAGCACTGATGTACCATCATTACCAGCGACACCCGTTACTCCTCAACCACCAAGCAACAATGAAACACAGTCAGAAGAAGCTCCTATATGGATATCGGCATCAGAACAAAACCACCCACTATCCAACTACCCTTGGTTCCATGGGACCCTCTCTAGACTTGGTGCGTCACATCTAGTATCACAGGGCAGTCAACAATGGCATGGAATATTCCTGGTACGTCAGAGTGAAACCAGACGAGGGGAATACGTTTTGACCTTCAACTATCAAGGAAGAGCAAAGCACCTGCGACTATCACTTAACGCAGAGGGTCAGTGTCGAGTGCAGCATCTATGGTTTCAGAGTATCTTTGAAATGCTAGAACATTTCCGAGCGAACCCTATTCCTCTTGAGAGTGGTGGGCCATCCGATGTAATGCTGGCCAATTTCGTTGTTAGCCAAACCAGAGGATCCTCATCAACACAAACCCTACCACCTCATCAGCGTAATAGTTTTGCTAGGGGTGAGGGGTTACGTAGATCTTACAGCGTTCAATCAAGTCGCATCAACCAACCTGCAGTGATCCAAGGTGGCTCTGTCCGTGCAACGATAGAAAGCATGGAACTGAACCACTCGCGAGCCATCGAGAATCAATATGCATTTGTTTAGACAAAGATATTTATATTTTTACAAAGAAAATATGCATTTTGAGATTTTTGTCTAAAATAATATCCAAATCAATAAGATTGAAATACAATTGTAAAAAGTTTATTGTGAATATTTTTATTTTATAATAATTATTATGTGCAGAATAGCTTCAGCAAGATTAATGTAATCCTTCATAAAGGAAGTGACGAGGTCTTTCCTTCAGCGATCTATTTTTATTTTGTACAGGATTAATTATCGCATTAGATCATAGCACAACATATATGCACATATACATGTGCTTGCTTATCTAATTCTAGGTTTCCTTTTAAATTGAATTACCAAATTAGGGTAATCGTCCTCATACAACCAATCAGAATTAAGGCCTGTCCATACGCAATTGTAGGGGTCCATGCAAGAACAATGTAAGTGTTCTCTGATCAAAATCAAATTTATCCTTTGGAATACAAAGACCTTGGAGAAGAACTAAGAATTTGATCATAGATCACTTAATATGTTCATTATTATAGTAGGAAGATTTAGCAAACAAATTTGGATGAGAAAGACAATGGTGCACACTAACAAAAATTTTTCAAAATGACGTCATGTGAAAACAGGTGAACGTTGTCACACTAGTTATGCAGTGACCAAATGCTATGTATTTATCCTCTCATTTCACATTGTATGTTCTTGTGGTGTTTGCTAAATCTATCTCATAATTTTATTAAAGTAAACTCTTCCATAATGTATTATTAATTATGAGAAAATGTTGAGAAAACATTTGGTGCCAGAGATTGTCAAACATGAGAAAATTTTTTAATAAAAAACGAATGAGAGCAAGAAGTTGGTCCCACAATCTGGGACAGATCTACATGTAGGGGGAATCACAGGGTGTTCGTGCACCCCCCTTCCTACCTAAGACATCATAATTTTTATCTAATACAAATAAGTTAAAGACTGTACGTACAAATATTTGTACCTGAGGTGAACTCCCCTACTCAAAATCCTAGATCTGCCCCTGACAATATTACATGTACATTATGGTGGGTAGGATTGGACAGGCTTTATGTGATTTCAAGTTCTTTTCACCCACCACAGAGAATGGAAATATAGTTCCTTTAATTTAATAATTATTATTAGTGTTCTAAAATGAGGAGTATGTTTAGTTGAGACCAAATACTCAAACTCAAACACTTAGATATCCAGTAGCTTACAACCTCAACTGAACGTACTCTTCTTACCACTGAAGGACAACATTGTCTTACTGTAATAGAATAAGTTTTAGAGCATTACAGAATACTGTATAGATCAGATTTCGTGTGACTATGAAAAGTCAGTGCCTCAATGTTTTGTTTGGATGATAATTTTTTTTTTCACCAATCAAAATGTTGAGGCACGGCACGGCACAGAGTTTTTCTCAATCCTTTGAGATTCCTGTGTCATGCCAAATGAAATGCTGCCTAGTGTATGTATATGATATCTTCTTTGCTTGTAAAAGCATACACAGTACTATGAGAAAATACTGTTACTCATAAGCATTATGAATGGAAAAAAAAGAATTAAAATCACACTATTTTTACTGCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JID9	SH2B adapter protein 2 OS=Mus musculus OX=10090 GN=Sh2b2 PE=1 SV=2
Q9Z200	SH2B adapter protein 2 OS=Rattus norvegicus OX=10116 GN=Sh2b2 PE=1 SV=1
Q62985	SH2B adapter protein 1 OS=Rattus norvegicus OX=10116 GN=Sh2b1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005936 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08916 all species →	Phe_ZIP	Phenylalanine zipper	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030523 all species →	Family	SH2B adapter protein	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR015012 all species →	Domain	Phenylalanine zipper	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR036290 all species →	Homologous_superfamily	Phenylalanine zipper superfamily	Interproscan
IPR035057 all species →	Domain	SH2B1, SH2 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10872 all species →	SH2B ADAPTER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005068 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase adaptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene06830.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.