Detailed information of gene06943.t1 in Actinoscyphia liui

Genomic Location: chr2:39893184...39909861
NR annotation: XP_020909660.1, putative RNA-binding protein EEED8.10 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A0A0D1C8Z4Glycine-rich RNA-binding protein 1 OS=Mycosarcoma maydis OX=5270 GN=GRP1 PE=1 SV=1
W8E7I1RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13516LRR_6Leucine Rich repeatRepeatInterproscan
PF12937F-box-likeF-box-likeDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001810DomainF-box domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR006553RepeatLeucine-rich repeat, cysteine-containing subtypeInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13318UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0019005Cellular ComponentSCF ubiquitin ligase complexInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10268FBXL2_20; F-box and leucine-rich repeat protein 2/20-Ubiquitin systemko04121deepkoala

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