Gene detail

Detailed information of gene07004.t1 in Actinoscyphia liui

Genomic Location: chr2:40775038...40815906
NR annotation: XP_020894526.1, intraflagellar transport protein 172 homolog [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene07004.t1

ATGCAGCTGCGATATATGAAAACATTGATGAACCCACAGGATGGCGCCTGTAAAGTTACAGCAATTGCATGTGCACCTAACAACCAGAAAATGGCCGTCGTCACCATGGACAGAGTGGTGATTCTCTATGACGAACTTGGTGAAAGAAGAGACAAATTTTCTACAAAACCTGCAAATCCTCAGGCTGGAAAGAAGAGTTATATTGTAAAAGGACTGGCCTTCTCACCAGATTCTACCAAAATAGCAGTTGGACAGACAGACAACATTATATTTGTTTACAAGATAGGAGAAGAATGGGGAGAGAAGAAAGTTATATGTAACAAATTTATTCAACAAAGTGCAGTAACTTGTCTTATTTGGCCACCCGAGCAACAGAATGTCATCTTTGGTCTGGCAGATGGAAAGGTACGACTTGCCAGCTTAAAAACTAACAAGTCGCAAACTATTTATGGAACAGACAGCTTTGTAGTCTCATTGACTCACAATACCACTGGTAAAGGCATTCTGTCAGGACATGCTGATGGTGCTATTGTAAGATATTTCTTTGATGACGAAGGAACAGGACTATCACAGGGTCAACTATGCAAGCATTCATGTCCACCGTATGCTTTGTGTTGGGGGTCCTCCATAGTAGCTGCTGGCTGTGACAAGAGAGTGGTTGCTTATGGAAAAGAAGGCCGTGTTCTTCAAAACTTTGACTATTCAAGAGATGATGATGAAAAGGAGTTTACGACAGCTGTATGCAGTCCTAGTGGACAGGCTGTTGTGATTGGAAGCTTTGACAGACTGAGAGTTTACAACTGGAGTCCGCGTAAAGGAGCATGGGATGAATCCAAAATAAAGGAAATCCCCAACCTCTACACTATCACAGCATTGTCATGGAAACGTGATGGCTCCAGACTTATCGCTGGGACCCTGTGTGGTGGTGTGGAGCTTTTTGACTGCTGCCTCAGAAGATCCATCTACAAAAATAAATTTGAGATGACGTATGTTGGACTGAGCCAGGTCATTGTTAAGAATTTGTCTTCTGGTACACGTGTTGTATTAAAGTCTCATTATGGTTACGAGGTTGATAAAGTTAGTATCATGGGTAAGGATAGATACCTGATTGCCTACACAACTGATACGTTACTACTGGGAGATCTCAACTCAAACAAGCTTAGTGAGGTCCCATGGCAAGGATCTGGTGGTAACGAGAAGTTCTTTTTTGAAAACGAAAGTGTGTGTATGATCTTTAATGCGGGAGAGCTGTCGCTGGTAGAGTATGGAAACAATGAGATTCTTGGGACAGTAAGGACAGAGTTTATGAACCCCCATCTCATCAGTGTCCGTCTGAATGAAAGGAAACAGCTAGGTATTGATGACAACAAAAAGATGGCATATCTAGTTGATCTCAAGACCATTAGTGTTGTTGATCTTTTAAGTGGTATAATTGAAGCTACAATCAGCCATGACTCCAAGATAGATTGGCTTGAGCTCAATGAAACAGGAAAGCACTTACTTTTTAGAGACAAGAAACTTAAGCTTCATCTTCTAAATGTACAAAGCCAGACACGTACAACTATACTGAACTACTGTACTTATGTGCAGTGGGTTCCACTCAGTGATGTGGTTGTGGCTCAAAACAGAGGAAACCTTTGTATTTGGTATAACATTGATTCACCAGAAAGGGTGACCATGTTTCCTATCAAGGGTGAAATCATGGACCTTGAACGAGTTGATGGTAAAACAGAAGTCATTGTAAACGAAGGGGTAACCAACATATCGTACACACTAGATGAAGGACTCATTGAGTTTGGTACAGCTATTGATGATGGAGACTTTGTCAGGGCCATAACGTTCTTGGAAAGCCTCGAAATGTCACAGGAGACTGATGCAATGTGGAAAACACTCAGTAAACTAGCCCTCGAGGGACGACAACTACACATAGCTGAACGGTGTTTTGCTGCTCTGGGAGATGTGTCTAAGGCTAAAGCACTGAAACAAATCAACAAGATAGCAGATCAAGCTGCTGAGGATATGGGAGGCGATGGTACCAACCATGTGCTTGTCAGAGCAAAGCTCGCAGTGTTGGACAAGAACTTCAAGCTTGCAGAGACTATTCTTCTAGAACAAGGGCACGTTGATGAGGCTATTGAGATGTACCAGGAACTCCACAAATGGGACGAAGCTATAGCAGTGGCTGAAGCCAAGGGCCACCCAGAGTTGGAGAATCTACGAGCCAATCACTATCACTGGCTGTCAGACACAGGACAAGAGGAGAAGGCTGGCGAGGTTAAAGAAACGGAAGGCAACTATATGGAGGCCATTAACTTGTACATGAAGGCTGGCCTGCCTGCTAAAGCTGCAAGACTGGCCATGAGTAGAGAGGAGCTGTACCAGTCATCAGACTTGATGGAACGTATTGCCTCATCTCTACTAAAAGGTGGACTTTATGAAAAGGCTGGAGAACTGTTTGAGAAAGTTGGTCGAAATGACAGGGCCTTGGAGTCATACAGAAAAGGGGGAGCTTACAGAAGAGCTGTTGAATTGTCTCGTTCGTCGTATCCTCATGAAGTTGTTAAGCTTGAAGAAGAATGGGGAGATCACCTGGCATCACAAAAACAACTGGATGCTGCTATTAACCATTACATTGAAGCTGGGTGCTCTGTCAAGGCTATCGAAGCCGCCATTCAAGCCAAGCAGTGGAACAAAGCTGTGCAGATAGTAGAACTACAAGATGACATTGTAGCTGAAAGGTATTACCACCAGATTGCACAGCACTATGCACAAGTACAAGAATACAAGATGGCAGAGAAGTTTTTTGTCAAGTCTAGCGATCCACGTTCAGCTATTGAGATGTACACCAAGGCCAACATGTACGAAGCAGCTCATAAGATTGCTGTCCAGTGTATGAAACCAGAAGAAGTTGCTGTGCTGTATATATCGCAGGCTCAAGAACTTGAAGCTCAGGGTCGCTTCAAAGAGGCAGAAAGATTGTATTGCACAGTCGATGAACCTGATTTGGCAATCAACATGTACAAAAAATTACGACAGTTCGATCAGATGATCAGACTTGTAACTATTCATCACAAAGATTTGCTGGGAGATACCCATTTACATCTTGCTAAGGAATTTGAAAATGAAGGACAACTACGTCAAGCAGAACACCACTATCTCGAAGCCAAAGAATGGAAAGCAGCTGTCAACATGTACAGAGCCAACGAGATGTGGGAAGAGTCTTACAGGACAGCTAAACAAAACGGCGGAGCCAATGCTGCTAAGCAAGTAGCATATCTGTGGGCTAAAGGCCTAGGTGGTGATTCTGCTGTTAAACTGTTGACTAAGTTTGGTTTGCTGGAGGCAGCTATTGACTACGCTGCTGAAAACTGTGCTTTTGACTTCGCATTCGACCTTGCTCGCACGTCAATGAAGCACAAACTACCAGAAATACACCTGAAGTACGCCATGTACCTAGAAGATGAAGGGAAATACAAAGAGGCCGAGGAACAATTCGTGAAGGCAGGGAGATCTAAAGAAGCAGTTCTCATGTATGTTCACAACCATGACTGGGACAGCGCCCAACGAGTGGCTGAAGAACACGACCCTGACAGTGTAGCAGATGTAATGGTTGGTCAGGCACGTGTGGCTTTCGATCGTAAAGAGTACCAGAAAACAGAGACTTTCCTTCTCAGAGCACAAAGACCAGAGCTGGCAGCTAAATATTACAAGGAAGCAAGCATGTGGACAGACGCTCTACGTGTCGTCAAGGAATATTTACCTCACAAGCTTGAGCAATGGCAGGATGAATATGACAGAGAAGTACTTTCTAAAGGCAACAGAGGGGCTGAATCCCTGTTGTCACAAGGCAAAGAGTGGGAAAAGAAAGGCGAATATACCCGTGCGATTGACATGTACATCAAGATAACCCCCAGCATGACCACTGATCACGATCTGGTAGAAAACGCTATGGTCAAGGCTGTCGAGCTAGCGATGAAGTTCGTCCCAGATCGTGCCGTAGACGTTGCCAATGTCGCTTGTCCTCGTCTAGCCGACATTAAAGCATTTGAACAGGGCGCTGAGCTGTACTTGGGAGTAGAGATGATAAAAGAGGCTATAGACATGTACATTGATGGTGAACTTTGGCCTAAAGCTAAACAATGTGCTGCAGAAATGGCACCAAGGTACGAACAATACGTAGAAGATGCGTACGTTAAATATCTCAAGAGCAAAGGACAAGCAGAAGAGCTTGTAGATGTAGACGTGATTGCTGGCCTTGATATGATGGTACAACGTGGCCAATGGGACAAAGCTATAGAGACTGCAGAACAACAGGGTTACGAGGTACTCAGTAAATACGTAGCATTATACGCTGCTAACAGTATCAAGGACGGGGATTCCCTGAAGGCACTGGAACTGTTTGCTCGCTATGGAGCTCCACCCAATACCCAGAACTTTAACATCTACAAACGTATTGTGAACGATGTGGTTTCCACGCCTGACTTGGATGGTGCTGAGAGTTATCGAACCTGGGCAGACCTGAGAGATGTTCTCTATGATATCGTCGAGGGAATATCCAAGGGAGGAGACGCGAACTCAACACAGGCTCAGGAATTTGAAGCCATGCTTAAAGTTTCTCATTATTATAGCAACCGAGCAGCTGCCTTACAACACAAGTCACTGGATACCTTAGCGGCAAAGCTGGCCATCTCATTGTTACGTCACTCTGACGTTGTACCATGTGACAAAGCGTTCTACGAGGCAGGGGTGGCGGCAAAGAGTGTTGGATGGGAAAACATGGCTTTCGTGTTTCTTAATCGATACTTGGATTTGAGTGAGGGTATCGAGGAAGGCACACTAGACATGTTGGACAACAGTGATTTCACAGACACAGATATTCCTTTTGAAGTTACTGTACCCGAGAAGCAGTTCTTGTCGGAAGAGAAAAGAGAAGAAATTAAGGAATGGGTGTTGGCTGTCTCCATGGATCAAAGGGTTGAACAAGTTCTCCCAACCGATGAACGAGACACATATGAAGCTTGTCTCGTTGCTGTCAACACAGGAATTACGTCACTGCCATGCGTTATTACTGGTTATCCAGTCCTCCGCAACAAGATCGACTTTAAGCGTCCAGAAAAGGCCGCGAATAAAGAAGAATGGAACAAGTTTATCATGGCGACTAAGGTGTCCCACAGCCCAGAATGTCAAGATGTCTTACGGTTCCTTGGTCATTGGTGTGGAGCCCCGCAGAACCCCTCTTACTCATTCAACTAG

Transcript

gene07004.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6VH22	Intraflagellar transport protein 172 homolog OS=Mus musculus OX=10090 GN=Ift172 PE=1 SV=1
Q5RHH4	Intraflagellar transport protein 172 homolog OS=Danio rerio OX=7955 GN=ift172 PE=2 SV=1
Q9JKU3	Intraflagellar transport protein 172 homolog OS=Rattus norvegicus OX=10116 GN=Ift172 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001845 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for gene07004.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15722 all species →	IFT140/172-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19676	IFT172; intraflagellar transport protein 172	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.